Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01709 ATGATAATTATTCGTAGAAGTGGCAATGGAGGTGATGGTGGTGGGTCGGCAATTACTTCCCAGATGCCGACAGTGACTGTGCATGATGCCGTACGCTATGTGCGTAAACTCAAATATGAGTTTCGAGACCAAAAGGAGAAGTTTTACATGTTCCATCAAGTCTTGGTTGATTACAGGAATGATAGGATTAACTATGCTAGTCTTGTGGCGAGGGCTAAGGAGATTTTAAAAGGGCACAAAAAATTGATTTTGGGTTTTAACCATTTCATAGAAAAGGACTATGAGATAACACTTCACAGGGCTGCACCAGAAGAAGAAGAAGTGAAGTTCATGAACAAGATAAAGAATCGATTCCAAAGTGATGAGCCTGTTTACAACTCAATCTTGGAAATTCTGAAAATGTACAAGGAAGGGCTTAAGGACATTGGTGAGGTTTCAAGTAAGCTTGCTGTCCATCTTGAGGACAATGAAGATTTGGTGGAGGATTTCAACAGATTCTTAGCTCGCCATGGTTGTGGGGATGTTGTTGAAGGATGA 537 0.4097 MIIIRRSGNGGDGGGSAITSQMPTVTVHDAVRYVRKLKYEFRDQKEKFYMFHQVLVDYRNDRINYASLVARAKEILKGHKKLILGFNHFIEKDYEITLHRAAPEEEEVKFMNKIKNRFQSDEPVYNSILEILKMYKEGLKDIGEVSSKLAVHLEDNEDLVEDFNRFLARHGCGDVVEG 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01709 178 ProSiteProfiles PAH domain profile. 100 170 IPR003822 GO:0006355
Phco5g01709 178 FunFam Paired amphipathic helix SIN3-like protein 102 170 - -
Phco5g01709 178 Gene3D Paired amphipathic helix 101 170 IPR036600 GO:0006355
Phco5g01709 178 SUPERFAMILY PAH2 domain 103 168 IPR036600 GO:0006355
Phco5g01709 178 PANTHER SIN3B-RELATED 26 169 IPR039774 GO:0003714
Phco5g01709 178 Gene3D Paired amphipathic helix 23 93 IPR036600 GO:0006355
Phco5g01709 178 ProSiteProfiles PAH domain profile. 23 93 IPR003822 GO:0006355
Phco5g01709 178 Pfam Paired amphipathic helix repeat 46 89 IPR003822 GO:0006355
Phco5g01709 178 Pfam Paired amphipathic helix repeat 124 167 IPR003822 GO:0006355
Phco5g01709 178 SUPERFAMILY PAH2 domain 23 94 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01709 Phco-Chr5 53225291 53229980 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco5g01709 PAH 3.1e-10 No_clan