Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01663 ATGGCCTTCCCTCCCTCTCACACCTTCATGTTCCAAACCCATGAAGATCATGACCACCACCAACTCCACCTACGCTCCACCTCTTCCTCCCTCAACGCCTTCCCCTCTTTCCCACCCCATCACTTTCAAGGTGCAGGTTTCATGATGAAGCGATCGATGTCGTTTTCAGGCATAGAGAACAAGTGCGATGAAGTGCATGGAGACGACGAGTTGTCAGATGATGGATCTCAGCTAGGGGAGAAGAAGAAGAGGCTGAGTTTGGAGCAGGTGAAGGCACTTGAGAAGAGCTTTGAATTGGGGAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTTGCCAAGGCTTTGGGGCTTCAACCAAGGCAAATCGCTATATGGTTCCAGAATAGGAGAGCAAGGTGGAAGACCAAGCAGCTTGAGAAGGAGTATGAAGTTCTCAAGAAGCAGTTTGAAGCTGTGAAAGCTGATAATGACTCCCTCAAGGCTCAGAATCAGAAATTACATGCAGAGCTACAGACTCTGAAAAATAGGGACTGCTGTGAAACCGGAACAGTTAGCCTCAAGAAAGAAACTGAGGGTTCTTGGAGCAATGGAAGCAACAACAGTTCAGAAATCAACTTGGACCTCTCAAGAACACCAGTGATGAACAGCCCTGTGTCTTCTCAGAATGGAAAAAGCCTTCTACCAACTTCCATTAAGCCAACAAGCATGACTCAACTCCTCCAATGCTCATCAAGATCAGATCTCCAAGATGAGAGCTTCTGCAACATGTTCCACAACATTGATGAGCAGCAGAATTTTTGGCCCTGGACTGAGCAGCAGCACCAGTTTCATTAA 834 0.4724 MAFPPSHTFMFQTHEDHDHHQLHLRSTSSSLNAFPSFPPHHFQGAGFMMKRSMSFSGIENKCDEVHGDDELSDDGSQLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDSLKAQNQKLHAELQTLKNRDCCETGTVSLKKETEGSWSNGSNNSSEINLDLSRTPVMNSPVSSQNGKSLLPTSIKPTSMTQLLQCSSRSDLQDESFCNMFHNIDEQQNFWPWTEQQHQFH 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01663 277 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Phco5g01663 277 FunFam Homeobox-leucine zipper protein ATHB-13 73 140 - -
Phco5g01663 277 Gene3D - 73 153 - -
Phco5g01663 277 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Phco5g01663 277 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Phco5g01663 277 Coils Coil 128 176 - -
Phco5g01663 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 269 IPR045224 GO:0003700
Phco5g01663 277 SMART HOX_1 79 140 IPR001356 GO:0003677
Phco5g01663 277 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Phco5g01663 277 CDD homeodomain 81 137 IPR001356 GO:0003677
Phco5g01663 277 SUPERFAMILY Homeodomain-like 72 138 IPR009057 -
Phco5g01663 277 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355|GO:0043565
Phco5g01663 277 Pfam Homeodomain 81 134 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01663 Phco-Chr5 52778746 52781147 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco5g01663 Homeodomain 1.2e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01663 5 52778746 52781147 Phco3g02816 3 54535207 54536983 PCT