Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01653 ATGGAGGAGAGGAATGAGATGGAAAAGATTGATGATGTTATGCCAGGATTTCGTTTTCACCCCACTGATGAAGAGCTTGTTGATTTCTATCTCAAGAGAAAAATCCAGCAGAAGTCTCTCCCTATTGAACTGATTAAGCAAGTGGATATTTACAAATATGATCCATGGGACCTTCCAAAGCTGGCAGGCACTGGAGAGAAAGAGTGGTACTTCTACTGTCCAAGGGACAGAAAATACAGGAACAGTGCACGTCCAAATAGGGTTACAAGAGCTGGATTTTGGAAGGCCACTGGAACTGACAGACCTATATATTCCTCAGATGGGAAGTGCATTGGTCTGAAGAAGTCTCTTGTGTTCTACAGAGGAAGAGCTGCCAAAGGGATGAAAACTGATTGGATGATGCATGAGTTTAGGTTGCCTTGCATTTCTGACTCAGCCCCTTCCAAAAAATTCTCAGACAAAAGCCTCCCTCCAAGTGATTCATGGGCAATCTGTAGGATATTCAAGAAAACCAACTCCCTTTCCATGGCACAGAAAGCTTTATCTCACCCTTGGATCTCTCAGTTACCTGGAAGCATGGTATCTGACATGTTCACACAGGGTGCAGCAAACCATCACCTAGGATCACCACCAGCCATTCAGTTTTGTGATGAGAGGCAAGAGTTACACCAAGTCTCCAACAATGACATCAACACCAACTTCACAGCTTCAGATATTCCCAATTACAAACCCATCAACAGCAGCACAGTTCCCAAGCCTTCACCAGAAATTCCTGTTTCAGATGGAGACCTTGCTGAGAACTTCATATTCTACACAGAACACACCAAGTGCACACTTGATGCCAGTTCCATGCTTTCTCCCAATCCTGACTACATAACATTTGAAGAGCCAAACCAACAACAGTATAGTGGCTTCTTAAACAATCTACCTCATTACATCCAACAAAACATGAGCACAGAAACAGTGACAAAAGAACAACAAGATTGGGAAACAATTGGGAGAACCACTGGATTTCCCTTTACTTTGCTTCCCCCATACGATGCATGGAAGTCTTCTTCTGTGGCATGGGACTCACCTCCTTGCCCCAGTGACATGTCCACCACCTATTCCACCAATAAATGCTACACTTGA 1131 0.4394 MEERNEMEKIDDVMPGFRFHPTDEELVDFYLKRKIQQKSLPIELIKQVDIYKYDPWDLPKLAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSDGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPCISDSAPSKKFSDKSLPPSDSWAICRIFKKTNSLSMAQKALSHPWISQLPGSMVSDMFTQGAANHHLGSPPAIQFCDERQELHQVSNNDINTNFTASDIPNYKPINSSTVPKPSPEIPVSDGDLAENFIFYTEHTKCTLDASSMLSPNPDYITFEEPNQQQYSGFLNNLPHYIQQNMSTETVTKEQQDWETIGRTTGFPFTLLPPYDAWKSSSVAWDSPPCPSDMSTTYSTNKCYT 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01653 376 Gene3D NAC domain 22 175 IPR036093 GO:0003677|GO:0006355
Phco5g01653 376 ProSiteProfiles NAC domain profile. 13 170 IPR003441 GO:0003677|GO:0006355
Phco5g01653 376 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Phco5g01653 376 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 272 - -
Phco5g01653 376 SUPERFAMILY NAC domain 11 170 IPR036093 GO:0003677|GO:0006355
Phco5g01653 376 FunFam NAC domain-containing protein 35 22 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01653 Phco-Chr5 52622873 52625367 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco5g01653 NAM 3.2e-37 No_clan