Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01649 ATGGAGATAATAACACCAACACCGCCACCAACAACCGTCACTGCGACAAACGCAGCCGCCAAATCGCCGGAACTCGACATAGAGACTCCGACCCGGATCCACCAAGCAGCTGGAAACTCGAATCCGAGTCCAAAGCCGGTGTCTTTCTCCAACGGGGTCTTGAAGCGCCACCATGCAAACCACCGCGCCGCCGCCGTGGTGGTTTACAAGGAATGCTTGAAGAACCACGTGGCGAGCTTAGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCGTCGCCGGCGGCAACCCCCGACGACCCCAGCTCCATCAAATGCGCCGCCTGCGGCTGCCACCGTAACTTCCACCGCCGCGAGCCAGAGGAGCCGCCAATTTCTCCGGTGACACATCATGTTCTGGAGTACCAGCCCCACCACCGTCACCACCCTCCTCCTCCGCCGCACCGGAGTCCGAACTCCTCCTCTCCGCCGCCGATCTCCTCCTACCCCTCCGCACCCCACATGCTCCTCGCCCTCTCCAGCGGCGGCGGCCTCTCCGTGGCGCCGGAAAACACTGCCGCTCCGGCTCCGGCGCACCACTCCCGGAAGCGCTTCCGCACGAAATTCAGCCAGGAGCAGAAGGAGAAGATGCACGAGTTCGCCGACAAAGTGGGGTGGAAGATGCAGAAGCGCGACGAAAACATGGTTTTGGAGTTTTGCAACGAGATTGGTGTGGACAGGGGAGTCCTCAAAGTGTGGATGCATAACAACAAGAACACTTTGGCCAAAAAAGACAACCTTAATGGTAGCGCTGCTATTGTCTCTGCTAACGGGATCAACCATGTCGCCAATGTAAACAAAGCTACCGTCAGAAGCAACGTTAATGGCCTCGAACATGAGCACGGTGCTGGAATCAACGGTAACACCAACAACGACCACAACCACAACCTCAGTTCTTCTCATGACGTGAACGAGTACGAGAATGACAGCGGAACAAACGGTGGTGGAACAAATGGGTCTTCTTCTTCTTAA 1014 0.5799 MEIITPTPPPTTVTATNAAAKSPELDIETPTRIHQAAGNSNPSPKPVSFSNGVLKRHHANHRAAAVVVYKECLKNHVASLGGHALDGCGEFMPSPAATPDDPSSIKCAACGCHRNFHRREPEEPPISPVTHHVLEYQPHHRHHPPPPPHRSPNSSSPPPISSYPSAPHMLLALSSGGGLSVAPENTAAPAPAHHSRKRFRTKFSQEQKEKMHEFADKVGWKMQKRDENMVLEFCNEIGVDRGVLKVWMHNNKNTLAKKDNLNGSAAIVSANGINHVANVNKATVRSNVNGLEHEHGAGINGNTNNDHNHNLSSSHDVNEYENDSGTNGGGTNGSSSS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01649 337 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 120 IPR006456 -
Phco5g01649 337 FunFam Zinc-finger homeodomain protein 2 184 257 - -
Phco5g01649 337 MobiDBLite consensus disorder prediction 292 337 - -
Phco5g01649 337 Pfam ZF-HD protein dimerisation region 67 121 IPR006456 -
Phco5g01649 337 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 255 - -
Phco5g01649 337 MobiDBLite consensus disorder prediction 1 26 - -
Phco5g01649 337 MobiDBLite consensus disorder prediction 298 337 - -
Phco5g01649 337 NCBIfam homeobox domain, ZF-HD class 196 253 IPR006455 -
Phco5g01649 337 MobiDBLite consensus disorder prediction 148 164 - -
Phco5g01649 337 Gene3D - 182 258 - -
Phco5g01649 337 MobiDBLite consensus disorder prediction 137 198 - -
Phco5g01649 337 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 69 120 IPR006456 -
Phco5g01649 337 SUPERFAMILY Homeodomain-like 186 257 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01649 Phco-Chr5 52500000 52501013 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Phco5g01649 ZF-HD_dimer 4.6e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01649 5 52500000 52501013 Phco3g02825 3 54671747 54672724 PCT