LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco5g01635	ATGCATTATGATGGTGATTTGGCTTCTACTGCAGCAGAGGTATGTGATATGAGAAGAGAAGAGAACAATGTGACATCAAACAGTTGCGTGCAGGGACTTGGAAAGTGTATGATGGATGCAATGGAGAACAATAATCTCAGAGACATAATGGCAGAGCAAACGTTTGATTTGCCACCAGGGTTCAGGTTCCATCCAACAGATGAAGAACTCATCACTCATTACCTCTCACAGAAGGTTCTTGATAGCTGCTTCTGCTCTAGGGCCATTGGAGAGGCGGATTTGAACAAGTGTGAACCATGGGATTTGCCTTGTATGGCCAAAATGGGTGAAAAGGAGTGGTATTTTTTCTCTGTGAGGGACAGAAAATACCCAACTGGTCAAAGGACTAATAGAGCCACTGGTGCTGGTTATTGGAAGGCCACAGGCAAAGACAAAGAGATATACAAGGCAAAGACACTTATTGGGATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCTCCAAGTGGGGAAAAAACGAACTGGGTCATGCATGAATACAGATTAGAAGATGATCATTCTATGCACAACCCACACAAAAAGGCCATGAATAATTGGGCCATCTGCAGGATTTTTGAGAAGACTAACTGTGGCAAGAAAATGCAGATTTCTGGTTTGGTGAGGTTCACCTCCTTTGGAAAGGAAATGCCTTCATTGATGGATTCTTCTCCATACAACACCAGTGAAGCAAAGCCTGTTTTGGGGGAGTCATCACACTTCTCAGATCCAAACCAAAGTGAGGACCTAAGAACACATGATGAACACATAGTTGATAGCCTAGAGACTCTCATGATGGCATCATCGTCTTCATATTCTTCAAACCCCTTTAATGTTTCCCCTGCCTCTTGGACTTTTGCCACACCCTCCTCTACTGTGCCCCACCAATCCCTCCAAGTTGGGAACTCACACTGCTCAGACTATTTCATGGATCAGGAACAGTCCATGTTGGGGATGCTGATTGAAAACCATGGATCAAGTAGTAGCCTGAGAACTCATAGACCACAGGATAAAGACTTTGATGCTGACATGTCCTCTCTGATGTACAATGATGAAATGTTTCAAAGATCATTTGGAAACCAGGAATATTCATCACCTTCTCTAGGACATGTGTACACTAGTGGCCTATGGGGATTCTGA	1176	0.4354	MHYDGDLASTAAEVCDMRREENNVTSNSCVQGLGKCMMDAMENNNLRDIMAEQTFDLPPGFRFHPTDEELITHYLSQKVLDSCFCSRAIGEADLNKCEPWDLPCMAKMGEKEWYFFSVRDRKYPTGQRTNRATGAGYWKATGKDKEIYKAKTLIGMKKTLVFYKGRAPSGEKTNWVMHEYRLEDDHSMHNPHKKAMNNWAICRIFEKTNCGKKMQISGLVRFTSFGKEMPSLMDSSPYNTSEAKPVLGESSHFSDPNQSEDLRTHDEHIVDSLETLMMASSSSYSSNPFNVSPASWTFATPSSTVPHQSLQVGNSHCSDYFMDQEQSMLGMLIENHGSSSSLRTHRPQDKDFDADMSSLMYNDEMFQRSFGNQEYSSPSLGHVYTSGLWGF	391

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco5g01635	391	SUPERFAMILY	NAC domain	53	207	IPR036093	GO:0003677\|GO:0006355
	Phco5g01635	391	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	56	299	-	-
	Phco5g01635	391	Gene3D	NAC domain	66	211	IPR036093	GO:0003677\|GO:0006355
	Phco5g01635	391	MobiDBLite	consensus disorder prediction	233	262	-	-
	Phco5g01635	391	MobiDBLite	consensus disorder prediction	233	255	-	-
	Phco5g01635	391	FunFam	NAC domain-containing protein 100-like	66	211	-	-
	Phco5g01635	391	Pfam	No apical meristem (NAM) protein	58	182	IPR003441	GO:0003677\|GO:0006355
	Phco5g01635	391	ProSiteProfiles	NAC domain profile.	57	207	IPR003441	GO:0003677\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco5g01635	Phco-Chr5	52314440	52316351	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Phco5g01635		NAM	5.5e-40	No_clan