Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01617 ATGGGTTGCATTAGCTCCAAAAATGTGGTTGCCAAAGCTTATTCTCCATCCCCAACAAGGGTGGAGATTTCAGAGGCGAATCACTCCTCCAGCAGGGGCCATTCTGCATTGAAGATTTTGGATTCCAAAGCAAATTTGGATAATGAGAGGAACAACAAGTTTAAGAAAAATAGTTCAAAGAAGAGTAATGGAGCTTTTAACTTAAGGCTTGGGTTGGCTCAAAGGAGTGTTGAAGCAGAACAAAATGCTGTTGGTTGGCCTCCTTGGCTCACTGCTGTTGCAGCAGAAGCCATTCAAGGTTGGATTCCCCTCAAAGCAGATTCTTTTCAAAAGTTAGAAAAGATTGGTCAAGGTACATATAGTAGTGTGTTTCGAGCTCGTGAAGTTGAAACTGGGAAGATATTTGCTTTGAAAAAGGTTCGCTTTGACAATTTTCAACCTGAGAGCATTAGGTTTATGGCAAGAGAAATAACGATCCTTCGTAGACTTGATCATCCAAACATCATGAAATTGGAGGGCATAATCACTTCTCGTCTATCAAATAGCATATACCTTGTATTTGAGTACATGGAGCATGATCTTGCTGGCCTAGTTTCACGTCCTGACATAGTGTTCACTGAATCACAGATAAAGTGTTATATGAGGCAACTTTTAAGTGGACTGGAGCATTGTCATATGCGAGGTATTATGCATAGAGACATCAAGGTATCAAATATCTTATTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATCAGTACAAATAATAAACATCCTTTGACAAGTCGTGTTGTGACTTTGTGGTATCGTCCTCCTGAACTATTGATGGGATCAACCAGCTATGGAGTATCAGTGGATCTATGGAGTGTTGGTTGTGTATTTGCAGAACTTTTTCTTGGGAAGCCTATCCTTAAGGGGAGAACTGAGGTTGAACAACTACACAAAATTTTTAAATTGTGTGGTTCTCCACCTGAGGAGTTCTGGAAAAAGACTAAACTTCCTCATGCAACCATGTTCAAGCCTCAAACAAATTATGAAAGCTCTCTTCGAGAAAGATGTGCAGATTTTCCTGCATCTGCTATAAGCCTACTTGAGACTTTATTATCCATTGATGCAAGCAACCGAGGAACTTCCTCATCTGCCTTAATGTCTGAGTATTTTAGTGCCAAGCCATACCCTTGTAACCCATCAAACCTGCCAAAATATTCACCTAGCAAAGAAATGGATGTAAAAATTCAAGAAGACTCATCCAGGAAAAATATTGAAGGTAAAATGAGAGAGGTTGCAACATCAAGAAGACAACAAAGACGAGTCTCTAAACTTTTGCAAGATCAAAACAATTTGGGTAGATCAAGTTCAAAAGAGATCATGCAAAACACTTCTCAAAATGGTCATAGAGATGATGGTAAAACACATCTTACAAAAGGAAAAGGAGGAGGCATGTACAAAGAGCATACAAAGTCTGCATTGGATGCTATGTCTGAGAGTTCCCAAATGATGAATGTTGTTAATGGTAATGGATACAGTGTGCCAATGCAAGTCCCAGGTTCTAATAATGATTATACATGGGTAAAAAGAAGAAAACAAGATGCATCATCAACTTTATCAGATGGCTCAAGAAGCAAAATTAGTGCACTAGATCCAAACTTTGCCAAAGGAACATATGATTTAACTAATCAAAGGGTTTCAATGGATTTTGATCCTGCTGAATTGATGAATGCACAGGGTCGAAGGGAACTTGATGCACAACGTGCAATTCGTAAATCAAGATTTGGAAGAGAAGCAGAAAAGCCTCAGCGCACGAACGAACAACACCGCAAACAATGCTCTCTTTTATCTTCCTTCACAATCCACCACTCTAGCCTTCGTTCCTCTTCGATTATAAAAATGGACAAATCAACTGGCCGTAGTGGTGGTGGAAGTGTGGACATGTTTCTTCCAAATTATAAGTTGGGGAAAACACTTGGCATTGGATCCTTTGGCAAGGTGAAAATTGCAGAGCATGTACTGACTGGTCATAAAGTTGCTATAAAGATCCTTAACCGCCACAAGATAAGAAGTATGGAAATGGAAGAAAAAGTTAGAAGGGAAATAAAAATTTTAAGATTATTTATGCATCATCACATTATTCGACTTTATGAGGTCATAGAAACCCCAACAGACATATATGTTGTTATGGAATATGTGAAATCTGGAGAGCTCTTTGATTACATAGTCGAGAAGGGTAGGTTGCAAGAGGACGAAGCCCGCCATTTTTTTCAGCAGATAATTTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGACCTGAAGCCTGAGAATTTACTTTTGGACTCCAAATTTAATATCAAGATTGCTGATTTTGGCTTGAGCAATATCATGCGTGATGGTCACTTTCTTAAGACAAGTTGCGGAAGCCCTAACTATGCGGCTCCAGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCACTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAACATTCCCAATCTCTTCAAAAAAATAAAGGGTGGGATATACACTCTTCCTAGTCATCTATCACCTGGTGCTAGAGAATTGATACCAAGGATGCTTGTGGTGGATCCCATGAAGAGGATGACCATACCTGAGATACGTCAACACCCATGGTTCCAAGTTCGTCTGCCACGTTATTTAGCAGTGCCACCACCAGATACACTGCAACAAGCCAAAAAGATTGACGAGGAGGTTATTCAAGAAGTGGTTAATATGGGATTTGACAGAAATCAATTGGTTGAATCTCTTGCGAATAGAATACAAAACAAGGGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTGTTTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATGGATTCTGGTTTCAACCGGGTCCACTCCAGTGAAGTTGCTTGTCCAGTTGTTGGACACCACAGCACAGGGTATATGGATTATCAGGGAGTAGGATTGCGGCAACAGTTCCCTGCTGAGAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCGCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTGCAAGAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTAGCATTCCTGGTCATCATGAAGGAATGATTAACAATTCTGTGCATAGTAATCATTACTTTGGAAATGATTCCAACATCATTGAAGATGAGGCTGTTTCTAAGTCAAATGTGGTAAAGTTTGAAGTACAGCTTAAGCTCGTGAGGAGAAGTATCTACTTGATCTTCAAAGGGTCCAGGGCCCACAGTTTCTTTTCTTGGATCTCTGTGCTGCTTTCCTTTCACAGCTTCGTGTACTCTAGCGTAAAGCTCACAAGTCACTAA 3471 0.4013 MGCISSKNVVAKAYSPSPTRVEISEANHSSSRGHSALKILDSKANLDNERNNKFKKNSSKKSNGAFNLRLGLAQRSVEAEQNAVGWPPWLTAVAAEAIQGWIPLKADSFQKLEKIGQGTYSSVFRAREVETGKIFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSRPDIVFTESQIKCYMRQLLSGLEHCHMRGIMHRDIKVSNILLNNEGVLKIGDFGLANTISTNNKHPLTSRVVTLWYRPPELLMGSTSYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKTKLPHATMFKPQTNYESSLRERCADFPASAISLLETLLSIDASNRGTSSSALMSEYFSAKPYPCNPSNLPKYSPSKEMDVKIQEDSSRKNIEGKMREVATSRRQQRRVSKLLQDQNNLGRSSSKEIMQNTSQNGHRDDGKTHLTKGKGGGMYKEHTKSALDAMSESSQMMNVVNGNGYSVPMQVPGSNNDYTWVKRRKQDASSTLSDGSRSKISALDPNFAKGTYDLTNQRVSMDFDPAELMNAQGRRELDAQRAIRKSRFGREAEKPQRTNEQHRKQCSLLSSFTIHHSSLRSSSIIKMDKSTGRSGGGSVDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRHKIRSMEMEEKVRREIKILRLFMHHHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARHFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKFNIKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARELIPRMLVVDPMKRMTIPEIRQHPWFQVRLPRYLAVPPPDTLQQAKKIDEEVIQEVVNMGFDRNQLVESLANRIQNKGTVTYYLLLDNRFRVFSGYLGAEFQETMDSGFNRVHSSEVACPVVGHHSTGYMDYQGVGLRQQFPAERKWALGLQSRAQPREIMTEVLKALQELNVCWKKIGHYNMKCRWVASIPGHHEGMINNSVHSNHYFGNDSNIIEDEAVSKSNVVKFEVQLKLVRRSIYLIFKGSRAHSFFSWISVLLSFHSFVYSSVKLTSH 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01617 1156 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01617 1156 CDD AMPKA_C 1025 1126 - -
Phco5g01617 1156 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 928 968 IPR015940 -
Phco5g01617 1156 FunFam Non-specific serine/threonine protein kinase 643 736 - -
Phco5g01617 1156 Gene3D Transferase(Phosphotransferase) domain 1 647 980 - -
Phco5g01617 1156 Pfam UBA/TS-N domain 929 965 IPR015940 -
Phco5g01617 1156 MobiDBLite consensus disorder prediction 471 488 - -
Phco5g01617 1156 ProSitePatterns Protein kinases ATP-binding region signature. 661 684 IPR017441 GO:0005524
Phco5g01617 1156 CDD UBA_SnRK1_plant 929 969 - -
Phco5g01617 1156 CDD STKc_CDK9_like 109 393 - -
Phco5g01617 1156 MobiDBLite consensus disorder prediction 417 488 - -
Phco5g01617 1156 SUPERFAMILY KA1-like 964 1124 IPR028375 -
Phco5g01617 1156 SUPERFAMILY Protein kinase-like (PK-like) 652 908 IPR011009 -
Phco5g01617 1156 Gene3D Transferase(Phosphotransferase) domain 1 192 433 - -
Phco5g01617 1156 ProSiteProfiles Protein kinase domain profile. 655 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01617 1156 FunFam Non-specific serine/threonine protein kinase 646 985 - -
Phco5g01617 1156 FunFam probable serine/threonine-protein kinase At1g54610 96 191 - -
Phco5g01617 1156 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Phco5g01617 1156 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 603 922 - -
Phco5g01617 1156 MobiDBLite consensus disorder prediction 446 470 - -
Phco5g01617 1156 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Phco5g01617 1156 Gene3D Kinase associated domain 1, KA1 1031 1130 - -
Phco5g01617 1156 CDD STKc_AMPK_alpha 652 907 - -
Phco5g01617 1156 ProSitePatterns Serine/Threonine protein kinases active-site signature. 774 786 IPR008271 GO:0004672|GO:0006468
Phco5g01617 1156 SMART uba_6 930 967 IPR015940 -
Phco5g01617 1156 SMART serkin_6 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01617 1156 SMART serkin_6 655 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01617 1156 MobiDBLite consensus disorder prediction 417 445 - -
Phco5g01617 1156 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Phco5g01617 1156 FunFam probable serine/threonine-protein kinase At1g54610 192 432 - -
Phco5g01617 1156 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01617 1156 Pfam Protein kinase domain 655 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01617 1156 SUPERFAMILY Protein kinase-like (PK-like) 103 400 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01617 Phco-Chr5 52059721 52077939 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Phco5g01617 Pkinase 2.2e-69 CL0016