Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01573 ATGTGCTCTGCTTCTTCTGTTACTTCTTCTTCTTCTTCATCTTCTTCTCCTTCTTCTTCTCATTGCAGTTCAGTGATCAAAAGGAATACTCTCATGCAATTTCAATTCCTTGTCTTCGTGGTTCTCTTAACGTTGCAAAATGACGCCGTTGCGATCGATTCGGACAAATCCGCGCTCCTCCGTATGAAGGCGTCGTTGTCCGACCCAGCCGGCGTTCTCTCCACATGGACCATCGCTGACAGTTCTGACTCCGGCCACTGTTACTGGTCCGGTGTCCTCTGCGACGATAACTCCCGCGTCGTCGCCGTCAACGTCACCGGAAACGGCGGCAACCGAGCCTCGCACCCGTGCTCCGATTCCTCTAAATTCCCCCTCTACGGTTTCGGAATTCGGAGAACATGCAAAGGTAGCAAAGGTTCTCTCTTTGGAAACTTTTCTTCTTTTAATTTCAATTTCATCAGTGAGCTGACGGAGCTTAGGGTTTTGTCTCTCCCCTTCAACGTGTTGGAGGGGGAAATTCCCGAAGCAATTTGGGGAATGGAAAAGCTAGAGGTTCTCGATTTAGAGGGGAACTTGATAAGTGGCTATCTTCCCTTGAGAATTAATGGCTTGAGGAAGTTGAGAGTTCTGAATCTTGGGTTTAATAGGATTATTGGGGAGGTACCTAGTTCAATTGCGTCTCTTGAGAGTTTGGAGGTTTTGAATTTGGCTGGTAATGAATTGAATGGTTCTGTGCCTGGTTTTGTTGGGAGGTTTAGAGGGGTGTATCTTTCGTTTAATCAGTTCAGTGGGGTTGTTCCGCGAGAGATTGGGGAGAATTGTTGGAAGCTTGAGCATTTGGATTTGTCTGGGAATTCGTTGGTTCAAGGGATTCCGGTGAGTTTGGGAAATTGTGGGAGGTTGAAGACGCTTTTGCTGTATTCCAATTTGTTGGAAGAAGGTATTCCTGGTGAGCTTGGGAAGCTTAAGAGACTTGAGGTGTTGGATGTTTCCAGGAACACTCTCAGTGGCTCTGTGCCGAGGGAACTTGGGAATTGCTCAGAGTTGTCGGTTCTTGTGCTGTCAAATCTCTTTGATGTGCGGCGGGATGCTGCCGGTGATTTTGGGAAATTGGGTTCAGTGAATGATGAGGTGAATTATTTTGAAGGGTCAATGCCTGTGGAGGTTTTTTCGCTTCCAAAGTTGAGGATACTGTGGGCTCCCATGGTGAATTTAGAGGGCAGTTTTCAGGGGAATTGGGGTGGTTGTCAGAGCTTGGAGATGGTAAATTTGGCTCAGAATTTTTTCAGTGGGGAATTTCCGAATCAGCTTGGTGTCTGCAAGAGGCTGCATTTTCTTGATTTAAGTGGAAACAATCTTACTGGGGTGCTTTCTGAAGAACTTCACGTTCCCTGTATGAGCGTGTTTGATGTTAGTGGGAACATGTTATCTGGTTCAGTTCCTGATTTCTCCAATACCGTTTGTCGCCCTGTTCCTTCCTGGAACGGAGACCTGTTTGAAGATGGGAATGTTTCCTCGCCATACGCGTCATTTTTTTTGTCAATGGTTCATGAAAGATCTCTTTTTACGTCCATGGGAGGAGTTGGTACTTCTGTTGTTCACAACTTTGGGCAAAACAGCTTTACTGGCATTCAGACGCTACCCATACCACATGACATGCTGGGGAAGAAGAACGGTTACACGTTTCTTGTTGGTGGAAATATTCTTACAGGATCATTTCCTACATATTTATTTGAGAAATGTGATGGATTAGATGCATTGCTTTTAAATGCCAGTTGTAATAAGATATCTGGTCATATACCTTCCAATATCAGTCGAATGTGTAGATCATTGAAATATTTGGATGTGTCTGGAAATCAACTTGCAGGAACGATTCCTGTTGATTTAGGGAATGTGGTCTCCCTTGTATCGCTGAACCTCAGTAAGAATCAGTTACAAGGTCAAATTCCCGCCAACCTTGGCCAGATGAAGAATCTAAAGTTTCTCTCTTTAGCTGGTAATAAATTAAATGGCTCAATTCCTACCAGCCTGGGGCAGTTGTACTCTTTGAAAGTCTTTGACCTTTCTTCAAACTCTCTTACTGGTGAGATTCCGAAGGCTATTGAGAACATGAGAAACCTGACTGATGTTTTGCTCAATAACAACAATCTTTCTGGTCACATTCCTGATGGTTTGGCATATGTCACTACACTCTCAGCATTCAATGTGTCTTTCAACAACTTATCTGGATACTTGCCTTCCAACAGTGGCTTGTTTAAATGCAGCAGTGCTGTTGGGAATCCATACCTAAGTGCCTGCCGTGGAGTCTCTCTGACTGTGCCATCAGGGAATCAGCTAGGGCCGATTGATAGCAACTCTTATAATACGGCAACAGAACAAGATACTGGCAAGAAGAGTGGGAGTGACTTCAGTTCTATTGAAATAGCATCTATAACTTCTGCTTCAGCCATTGTTTCAGTACTTATAGCCCTGATTGTTCTATTCTTTTACACACGGAAGTGGAAGCCAAGGTCCAGGGTTGTTGGCTCTACAAGAAAAGAAGTTACAGTGTTTACTGATATTGGGGTCCCATTGACGTTTGAAACTGTTGTCCAAGCCACAGGAAATTTCAATGCTGGCAACTGTATTGGGAGTGGAGGTTTTGGGGCAACATACAAGGCAGAGATATCATCAGGAATCCTGGTGGCAGTCAAACGTTTAGCAGTTGGACGTTTCCAAGGTGTTCAACAATTCCATGCCGAGATCAAGACCCTTGGCAGGCTTCATCATCCAAATCTTGTCACTCTGATTGGTTATCATGCTTGTGAGACAGAGATGTTTCTCATATACAATTATTTGCCAGGTGGTAATCTCGAAAAGTTTATCCAGGAGAGGTCCACGAGGGCGGTGGACTGGAGAATTCTTCACAAGATTGCATTGGACATTGCCCGAGCACTTGCATATCTGCATGATCAATGTGTTCCCCGTGTTCTTCACCGCGATGTCAAGCCCAGCAACATCTTGTTGGATGATGATTTCAATGCTTATCTATCGGACTTCGGATTGGCTAGACTTCTGGGAACTTCAGAGACACATGCTACCACTGGTGTAGCAGGAACATTTGGGTATGTTGCCCCAGAATATGCCATGACTTGCCGTGTTTCTGATAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTGCTCTCAGACAAGAAGGCATTGGACCCTTCATTTTCTTCTTTTGGAAATGGGTTCAACATAGTGGCATGGGCATGCATGCTACTGAAGCAAGGAAGGGCAAATGAGTTCTTCACTGCTGGGTTATGGGAAGCAGGACCTGGAGATGATTTGGTAGAGGTGCTTCACTTGGCAATTGTGTGTACTGTTGACTCTCTCTCTACCAGACCTACAATGAAACAAGTTGTGAGAAGGCTTAAGCAACTTCAACCCCCATCATGCTAG 3450 0.4487 MCSASSVTSSSSSSSSPSSSHCSSVIKRNTLMQFQFLVFVVLLTLQNDAVAIDSDKSALLRMKASLSDPAGVLSTWTIADSSDSGHCYWSGVLCDDNSRVVAVNVTGNGGNRASHPCSDSSKFPLYGFGIRRTCKGSKGSLFGNFSSFNFNFISELTELRVLSLPFNVLEGEIPEAIWGMEKLEVLDLEGNLISGYLPLRINGLRKLRVLNLGFNRIIGEVPSSIASLESLEVLNLAGNELNGSVPGFVGRFRGVYLSFNQFSGVVPREIGENCWKLEHLDLSGNSLVQGIPVSLGNCGRLKTLLLYSNLLEEGIPGELGKLKRLEVLDVSRNTLSGSVPRELGNCSELSVLVLSNLFDVRRDAAGDFGKLGSVNDEVNYFEGSMPVEVFSLPKLRILWAPMVNLEGSFQGNWGGCQSLEMVNLAQNFFSGEFPNQLGVCKRLHFLDLSGNNLTGVLSEELHVPCMSVFDVSGNMLSGSVPDFSNTVCRPVPSWNGDLFEDGNVSSPYASFFLSMVHERSLFTSMGGVGTSVVHNFGQNSFTGIQTLPIPHDMLGKKNGYTFLVGGNILTGSFPTYLFEKCDGLDALLLNASCNKISGHIPSNISRMCRSLKYLDVSGNQLAGTIPVDLGNVVSLVSLNLSKNQLQGQIPANLGQMKNLKFLSLAGNKLNGSIPTSLGQLYSLKVFDLSSNSLTGEIPKAIENMRNLTDVLLNNNNLSGHIPDGLAYVTTLSAFNVSFNNLSGYLPSNSGLFKCSSAVGNPYLSACRGVSLTVPSGNQLGPIDSNSYNTATEQDTGKKSGSDFSSIEIASITSASAIVSVLIALIVLFFYTRKWKPRSRVVGSTRKEVTVFTDIGVPLTFETVVQATGNFNAGNCIGSGGFGATYKAEISSGILVAVKRLAVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSFGNGFNIVAWACMLLKQGRANEFFTAGLWEAGPGDDLVEVLHLAIVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01573 1149 MobiDBLite consensus disorder prediction 1 20 - -
Phco5g01573 1149 Pfam Leucine Rich repeat 608 622 IPR001611 GO:0005515
Phco5g01573 1149 SUPERFAMILY Protein kinase-like (PK-like) 852 1141 IPR011009 -
Phco5g01573 1149 Pfam Leucine rich repeat N-terminal domain 53 95 IPR013210 -
Phco5g01573 1149 Pfam Leucine Rich Repeat 276 298 IPR001611 GO:0005515
Phco5g01573 1149 Pfam Leucine Rich Repeat 682 704 IPR001611 GO:0005515
Phco5g01573 1149 Pfam Leucine Rich Repeat 206 228 IPR001611 GO:0005515
Phco5g01573 1149 Pfam Protein kinase domain 873 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01573 1149 ProSitePatterns Protein kinases ATP-binding region signature. 876 898 IPR017441 GO:0005524
Phco5g01573 1149 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 372 547 - -
Phco5g01573 1149 Gene3D Ribonuclease Inhibitor 518 785 IPR032675 -
Phco5g01573 1149 Gene3D Ribonuclease Inhibitor 363 500 IPR032675 -
Phco5g01573 1149 Gene3D Ribonuclease Inhibitor 253 358 IPR032675 -
Phco5g01573 1149 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 946 1148 - -
Phco5g01573 1149 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 252 362 - -
Phco5g01573 1149 SMART serkin_6 870 1148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01573 1149 SUPERFAMILY L domain-like 315 482 - -
Phco5g01573 1149 ProSitePatterns Serine/Threonine protein kinases active-site signature. 990 1002 IPR008271 GO:0004672|GO:0006468
Phco5g01573 1149 FunFam Leucine-rich repeat receptor protein kinase EMS1 678 757 - -
Phco5g01573 1149 SUPERFAMILY L domain-like 52 357 - -
Phco5g01573 1149 Gene3D Phosphorylase Kinase; domain 1 833 945 - -
Phco5g01573 1149 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 379 1143 - -
Phco5g01573 1149 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 834 945 - -
Phco5g01573 1149 CDD STKc_IRAK 876 1144 - -
Phco5g01573 1149 Gene3D Transferase(Phosphotransferase) domain 1 946 1146 - -
Phco5g01573 1149 Gene3D Ribonuclease Inhibitor 50 252 IPR032675 -
Phco5g01573 1149 SUPERFAMILY L domain-like 564 749 - -
Phco5g01573 1149 ProSiteProfiles Protein kinase domain profile. 870 1144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01573 1149 SMART LRR_typ_2 322 346 IPR003591 -
Phco5g01573 1149 SMART LRR_typ_2 632 656 IPR003591 -
Phco5g01573 1149 SMART LRR_typ_2 704 728 IPR003591 -
Phco5g01573 1149 SMART LRR_typ_2 680 703 IPR003591 -
Phco5g01573 1149 SMART LRR_typ_2 276 298 IPR003591 -
Phco5g01573 1149 SMART LRR_typ_2 228 250 IPR003591 -
Phco5g01573 1149 SMART LRR_typ_2 156 180 IPR003591 -
Phco5g01573 1149 SMART LRR_typ_2 204 227 IPR003591 -
Phco5g01573 1149 FunFam LRR receptor-like serine/threonine-protein kinase 606 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01573 Phco-Chr5 51705968 51709417 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Phco5g01573 Pkinase 4.5e-43 CL0016