Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01572 ATGTTTTCTTCTTCTTCTTCTCATTGCAGTTCAGTGATCAAATGGAATTCCCTAGTGCGGTTTCTCTTCCTCGTCTTCGTACTTCTCTTCTCGTTGCGAAGCGATGCCGTATTGGCCGATTCAGACGAAACCGTACTCCTCCGTCTGAAGGCATCGTTCTCCGACCCCGCCGACGTTCTCTCCACATGGACCTCCGCTGCCGGCGCTGACTCTGGATACTGCTCCTGGTCTGGCGTCCTCTGCAACGCGAACTCCCGGGTCGTCGCCATCAACGTCACCGGAAAAGGCAACAACCGAACCTCTCACCTGTGTACTGGTTTCTCTCAATTCCCCCTTTACGGATTCGGAGTTCGGCGAACGTGCGAAGGTAGTAAAGGTTCTCTCTTTGGAAGCTTTTCTTCTTTTAATTTCATCAGTGAGCTCACGGAGCTTAGGGTTTTGTCTCTTCCCTTCAACGCGTTGGAGGGTGAAATCCCCAAAGCGATTTGGGGCATGGAAAAGCTCGAGGTTCTCGATTTAGAAGGGAATTTGATAAGCGGATATCTTCCCTTGAGAATTAACGGCTTGAGGAAGTTGAGGGTTCTGAATCTTGGGTTTAATAGGATTGTAGGAGAGATTCCCCTTTCAATTTCTTCTCTTGAGAGTTTGGAGGTTTTGAATTTGGCTGTTAATGAATTGAATGGTTCTGTGCCTGGTTTTGTTGGGAGGCTTAGAGGGGTTTACCTTTCGTTTAATCAGTTCAGTGGGGTTGTTCCGCGAGAGATTGGGGAGAATTGTTGGAAGCTTGAGCATTTGGATTTGTCTGGGAATTCGTTGGTTCAAGGGATTCCTGGGAGTTTGGGGAATTGTGGGAGGTTGAGGACGCTTTTACTGTATTCTAATTTACTAGAAGAGGGTATTCCTGGTGAGCTTGGGAAGCTCAAGAGCCTTGAGGTGTTGGATGTTTCCAGGAACACTCTTAGTGGTTCTGTGCCAGGAGAGCTTGGGAATTGCTCGGATTTGTCAGTCCTGGTGCTGTCAAATCTCTTTGATGTGCGGGGGGATGTTGCCGGAGATTTTGGGAAATTGGGTTCTGTGAATGATGAGCTGAACTATTTTGAAGGGTCGATGCCTGTGGAGGTTTTGTCGCTTCCGAAGCTGAGGATATTGTGGGCTCCCATGGTGAATTTGGAAGGCAGTTTTCAGGTAAGTTGGGGTCGTTGTCAGAGCTTGGAGATGGTCAATTTGGCTCAGAATTTTTTCAGTGGGGAGTTTCCGAACCAGCTTGGTGTCTGCGAGAGACTGCATTTTCTTGATTTAAGCGGAAACAACCTTACTGGGGTTCTTTCTGAAGAACTTCACGTTCCCTGTATGAGCACGTTTGATGTTAGTGGGAACATGTTATCTGGTTCAATTCCTGATTTCTCCAGTACTGTTTGTCCCCCTGAACCTTCTTGGAATGGAGACCTGTTTGAAGATGGCAATGTTTCTCCACCATATGCATCCTTTTTTTCGTCAAAGGTTCAGGAGAATTCACTTTTCACAGCAATGGGGGGAGTTGGTATTTCAGTTGTTCACAACTTTGGTCAAAACAAATTCAATGGCATTCAGTCTTTACCTATGGCACGTGACAGGCTGGGGAAACAGAGCAGCTACACATTTCTGGTTGGTGAAAATAATCTTACTGAACCATTTCCTACATATTTATTTGAGAAATGCCATGGATTAGATGCATTGCTTCTAAATGTTAGTTATAATAGGATATCTGGCCATATTCCTTCCAGTCTCAGTGGGATATGCAGATCATTGAAACTTTTGGATGTGTCTGGAAATCAGCTTGCAGGATCAATTCCTGTTGATTTAGGGAATATGGTCTCCCTTGCATCGCTGAACCTCAGTAGGAATCAGTTAGAAGGTCAGATTCCCACCAGCCTTGGCCAGATAAAGAATCTGAAGTTTCTTTCTTTGGCTGATAATAAGTTAAATGGCTCAATTCCGACCAGCCTTGGGCAGTTGTACTCTTTGGAGATCTTGGACCTTTCTTCAAACTATCTTACTGGTGAGATTCCGAAGGCTATTGAGAACATGAGAAACCTGACTGATGTTTTGCTGAATAACAACAATCTTTCTGGTCACATTCCTGATGGTTTGGCATATGTCACTACACTCTCAGCATTCAATGTGTCTTTCAACAACTTATCTGGATCGTTGCCTTCAAATAGTGGCTTGATTAAATGCAGCAGTGCTGTTGGGAATCCGTATCTAAGCCCCTGCCGAGGAGTTTCTCTATCTGTGCCATCAGGAAGTCAACTAGGGCCTATTGATGGCAACCCTTATAATTCAGAAGCAGAACAAGCTACTGGCAAGGAGAATGGGAATGGCTTGAGCTCTATTGAAATAGCATCTATAACTTCTGCTTCAGCCATTTTTTCAGTTCTTATAGCCCTGATTGTTCTATTCTTTTACACTCGGAAGTGGAAGCCTAGGTCCCGAGTTGTGGGTTCTACAAGAAAAGAAGTTACAGTGTTTACTGATATTGGGGTCCCATTGACGTTTGAAACTGTTGTCCAAGCCACAGGAAATTTCAATGCTGGCAACTGTATTGGGAGTGGAGGTTTTGGGGCAACATACAAGGCAGAGGTATCACCAGGAATCCTGGTGGCAGTCAAACGACTTGCAGTTGGACGTTTCCAAGGTGTTCAACAATTCCATGCTGAAACCAAGACCCTTGGGAGGCTTCATCATCCAAATCTAGTCACTCTGATTGGTTATCATGCTTGTGAGACAGAGATGTTTCTCATATACAATTATTTGCCTGGTGGGAATCTTGAAAAGTTCATCCAGGAGAGGTCCACAAGGGTTGTGGATTGGAGGATTCTTCACAAGATTGCATTGGACATAGCCCGTGCACTGGCCTATCTGCATGATCAGTGTGTTCCCCGTGTTCTTCACCGTGATGTCAAGCCCAGCAACATCTTGTTGGATGATGATTTCAATGCTTATCTATCGGACTTTGGATTGGCTAGACTTCTGGGAACTTCAGAGACACATGCTACCACTGGTGTAGCTGGAACATTTGGGTATGTTGCTCCAGAATATGCCATGACTTGCCGTGTTTCTGATAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTGCTCTCAGACAAGAAGGCATTGGACCCTTCATTTTCTTCTTTTGGAAATGGGTTCAACATAGTGGCATGGGCATGCATGCTACTGAAGCAAGGAAGGGCAAATGAGTTCTTCACTGCTGGGTTATGGGAAGCAGGACCTGGAGATGATTTGGTAGAGGTGCTTCACTTGGCAATTGTGTGTACTGTTGACTCTCTCTCTACCAGACCTACAATGAAACAAGTTGTGAGAAGGCTTAAGCAACTTCAACCCCCATCATGCTAG 3405 0.4529 MFSSSSSHCSSVIKWNSLVRFLFLVFVLLFSLRSDAVLADSDETVLLRLKASFSDPADVLSTWTSAAGADSGYCSWSGVLCNANSRVVAINVTGKGNNRTSHLCTGFSQFPLYGFGVRRTCEGSKGSLFGSFSSFNFISELTELRVLSLPFNALEGEIPKAIWGMEKLEVLDLEGNLISGYLPLRINGLRKLRVLNLGFNRIVGEIPLSISSLESLEVLNLAVNELNGSVPGFVGRLRGVYLSFNQFSGVVPREIGENCWKLEHLDLSGNSLVQGIPGSLGNCGRLRTLLLYSNLLEEGIPGELGKLKSLEVLDVSRNTLSGSVPGELGNCSDLSVLVLSNLFDVRGDVAGDFGKLGSVNDELNYFEGSMPVEVLSLPKLRILWAPMVNLEGSFQVSWGRCQSLEMVNLAQNFFSGEFPNQLGVCERLHFLDLSGNNLTGVLSEELHVPCMSTFDVSGNMLSGSIPDFSSTVCPPEPSWNGDLFEDGNVSPPYASFFSSKVQENSLFTAMGGVGISVVHNFGQNKFNGIQSLPMARDRLGKQSSYTFLVGENNLTEPFPTYLFEKCHGLDALLLNVSYNRISGHIPSSLSGICRSLKLLDVSGNQLAGSIPVDLGNMVSLASLNLSRNQLEGQIPTSLGQIKNLKFLSLADNKLNGSIPTSLGQLYSLEILDLSSNYLTGEIPKAIENMRNLTDVLLNNNNLSGHIPDGLAYVTTLSAFNVSFNNLSGSLPSNSGLIKCSSAVGNPYLSPCRGVSLSVPSGSQLGPIDGNPYNSEAEQATGKENGNGLSSIEIASITSASAIFSVLIALIVLFFYTRKWKPRSRVVGSTRKEVTVFTDIGVPLTFETVVQATGNFNAGNCIGSGGFGATYKAEVSPGILVAVKRLAVGRFQGVQQFHAETKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERSTRVVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSFGNGFNIVAWACMLLKQGRANEFFTAGLWEAGPGDDLVEVLHLAIVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01572 1134 ProSitePatterns Protein kinases ATP-binding region signature. 861 883 IPR017441 GO:0005524
Phco5g01572 1134 SMART serkin_6 855 1133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01572 1134 CDD STKc_IRAK 861 1129 - -
Phco5g01572 1134 Gene3D Transferase(Phosphotransferase) domain 1 931 1131 - -
Phco5g01572 1134 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 357 532 - -
Phco5g01572 1134 Gene3D Ribonuclease Inhibitor 38 236 IPR032675 -
Phco5g01572 1134 Pfam Leucine rich repeat N-terminal domain 39 82 IPR013210 -
Phco5g01572 1134 SUPERFAMILY Protein kinase-like (PK-like) 837 1126 IPR011009 -
Phco5g01572 1134 FunFam Leucine-rich repeat receptor protein kinase EMS1 660 743 - -
Phco5g01572 1134 SUPERFAMILY L domain-like 552 732 - -
Phco5g01572 1134 Pfam Leucine Rich Repeat 261 283 IPR001611 GO:0005515
Phco5g01572 1134 Pfam Leucine Rich Repeat 667 689 IPR001611 GO:0005515
Phco5g01572 1134 SUPERFAMILY L domain-like 41 342 - -
Phco5g01572 1134 ProSiteProfiles Protein kinase domain profile. 855 1129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01572 1134 PRINTS Leucine-rich repeat signature 665 678 - -
Phco5g01572 1134 PRINTS Leucine-rich repeat signature 428 441 - -
Phco5g01572 1134 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 819 930 - -
Phco5g01572 1134 ProSitePatterns Serine/Threonine protein kinases active-site signature. 975 987 IPR008271 GO:0004672|GO:0006468
Phco5g01572 1134 Pfam Protein kinase domain 858 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01572 1134 Gene3D Ribonuclease Inhibitor 237 354 IPR032675 -
Phco5g01572 1134 Gene3D Ribonuclease Inhibitor 496 757 IPR032675 -
Phco5g01572 1134 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 237 347 - -
Phco5g01572 1134 SMART LRR_typ_2 234 258 IPR003591 -
Phco5g01572 1134 SMART LRR_typ_2 665 688 IPR003591 -
Phco5g01572 1134 SMART LRR_typ_2 261 283 IPR003591 -
Phco5g01572 1134 SMART LRR_typ_2 189 213 IPR003591 -
Phco5g01572 1134 SMART LRR_typ_2 141 165 IPR003591 -
Phco5g01572 1134 SMART LRR_typ_2 689 713 IPR003591 -
Phco5g01572 1134 SMART LRR_typ_2 307 331 IPR003591 -
Phco5g01572 1134 SMART LRR_typ_2 617 641 IPR003591 -
Phco5g01572 1134 FunFam Leucine-rich repeat receptor protein kinase EMS1 559 659 - -
Phco5g01572 1134 SUPERFAMILY L domain-like 301 468 - -
Phco5g01572 1134 Gene3D Ribonuclease Inhibitor 355 477 IPR032675 -
Phco5g01572 1134 Gene3D Phosphorylase Kinase; domain 1 818 930 - -
Phco5g01572 1134 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 237 1128 - -
Phco5g01572 1134 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 931 1133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01572 Phco-Chr5 51694176 51697580 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Phco5g01572 Pkinase 6.6e-42 CL0016