Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01538 ATGGGGAGGGGAAGAGTGGAACTCAAAAGGATAGAGAACAAGATAAACAGGCAGGTAACGTTTGCCAAGAGGAGAAATGGCCTTCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTTATCATCTTTTCCACCCGTGGCAAGCTTTATGAATTTTGTAGCAGTTCAAGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTACGGTGCAGTGGAAGTCAGCAAACCTGCCAAAGAGCTTGAGCAGAGCAGCTATCGTGAGTACTTGAAGCTGAAAGGAAGATTTGAATCTCTTCAGAGGACACAAAGAAACCTTCTAGGTGAAGACTTGGGCCCATTAAATACCAAAGAACTTGAGCAGCTTGAGAGGCAACTAGATTCATCTCTCAAGCAAGTGAGGTCGACAAAGACTCAATTTATGCTGGACCAGTTAGCTGATCTTCAAAATAAGGAGCAGATGTTGGTAGAAGCAAACAGAGCTTTAACCATGAAGCTGGATGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGCGATCAAAGTATGCCTTATGGTACTCCGAATGCTCATTCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAATCCAACATTGCAGATAGGTTCTGACTACAGGTACAACCCTGAAGCCTCTGATCAGCTAACTGGGACAACTCAAGCTCAACAAGTGAACGGTTTTATTCCTGGATGGATGCTTTGA 747 0.4431 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELEQSSYREYLKLKGRFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRALTMKLDEINSRNQYRQTWEAGDQSMPYGTPNAHSQGFFQPLECNPTLQIGSDYRYNPEASDQLTGTTQAQQVNGFIPGWML 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01538 248 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Phco5g01538 248 Coils Coil 125 145 - -
Phco5g01538 248 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Phco5g01538 248 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Phco5g01538 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phco5g01538 248 FunFam MADS-box transcription factor 1 13 88 - -
Phco5g01538 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Phco5g01538 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco5g01538 248 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco5g01538 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco5g01538 248 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco5g01538 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco5g01538 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco5g01538 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco5g01538 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01538 Phco-Chr5 51235352 51239988 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco5g01538 K-box 1.9e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01538 5 51235352 51239988 Phco3g02967 3 56021032 56026714 PCT