Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01537 ATGGGAAGAGGGAGGGTTCAGCTGAAGCAGATCGAGAACAAAATCAGTCGCCAAGTTACCTTCTCCAAAAGGAGAACCGGTCTGCGCAAGAAAGCTAATGAAATCTCTGTGCTCTGTGATGCTCAAGTGGCACTGATTGTCTTCAATGCCAAAGGGAAACTCTTTGAGTATTCGTCTGAATCCAGTATGGAAAACGTCCTTGAACGATATGAGAGACATGCCCACATAGGGCAACTTGTTGAATATGGAGATGAATCACAGGGCAACTGGTCCTTGCAATGCTTCAAGCTCACCGGCAAAGTTGAAGTCTTAGAGAGAAACTTAAGGAACTTTGTGGGACAAGATCTGGATCCCTTGAACTTGAGAGAGCTTCAGAGTTTGGAGCATCAGCTTGACACAGCTATAAAGCGCATCCGAACTAGAAAGAGCCAAGTTATGAACGAATCCATCTCAGATCTGCAGAAAAAGGCAAAGCAATTGCAAGAGCAAAATGGCACACTTACAAAGAAGATTAAGGAGAAAGGAAAGGCAGTGGCTGAACTTCCACAATGTGTGCCAGAAACCTTAGGTCAAACATGCCCTCGAGAGCTACAACCACAACATAGACTTGTTCCTTCTTTAACACTCGGTGAGAATCTAGAAGCAGCAGCACCACTGCAGGAAGTGGATGAAGCACGAGCAGTTGGTAGTACCACTACTCTGATCCCACCATGGATGCTGCATCATTTTACAAGATAA 738 0.4512 MGRGRVQLKQIENKISRQVTFSKRRTGLRKKANEISVLCDAQVALIVFNAKGKLFEYSSESSMENVLERYERHAHIGQLVEYGDESQGNWSLQCFKLTGKVEVLERNLRNFVGQDLDPLNLRELQSLEHQLDTAIKRIRTRKSQVMNESISDLQKKAKQLQEQNGTLTKKIKEKGKAVAELPQCVPETLGQTCPRELQPQHRLVPSLTLGENLEAAAPLQEVDEARAVGSTTTLIPPWMLHHFTR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01537 245 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Phco5g01537 245 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Phco5g01537 245 Coils Coil 143 170 - -
Phco5g01537 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco5g01537 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco5g01537 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco5g01537 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco5g01537 245 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Phco5g01537 245 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Phco5g01537 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
Phco5g01537 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco5g01537 245 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco5g01537 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Phco5g01537 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phco5g01537 245 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01537 Phco-Chr5 51203448 51218346 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco5g01537 K-box 9.2e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01537 5 51203448 51218346 Phco3g02968 3 56034011 56044957 PCT