Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01515 ATGAGGAAACCTGATATGATGGGAAAAGACAAATTGAACACCACCTCCACCACCACCACCACCATTAACACCAACAGCAGCACTAAGAGCAAGCTAAGGAAGGGGTTGTGGTCACCTGAGGAAGATGAGAAACTGATAAGGTACATGATCACTAAGGGACAAGGTTGCTGGAGTGACATTGCTAGGAATGCTGGCCTTCAAAGGTGCGGCAAAAGTTGCCGTCTTCGTTGGATCAACTACTTGAGACCTGATCTCAAACGTGGTGCATTTTCACCCCAAGAGGAAGAACTCATCATTCATTTGCACTCCATTCTTGGAAATAGATGGTCTCAGATTGCTGCACGTCTCCCTGGTCGCACAGACAATGAAATCAAGAATTTTTGGAACTCCACACTGAAGAAAAGGTTGAAAATCAGCAACAACAACAGCACTTCATCACCAAACAACAGTGACTCATCAGACCCTAGAGATGTCATGGGGGGGATAATGCCAATGAATGAGCATGACCTCATGACCATGTGCATGGACTCCTCCTCATCAACATCATCATCATCCATGCAATCCATGCAAGCCAACATGGCACTAACTGACCAATTTGACCCTTTTCCCTTGTTGTCCAACCGTTATGACATGACCACCGGTGCATCCGGTTTCCTTGACAATATGGCTGCATGCTTAACCCAAGTTGGTATGGTAGATCATGATGATGGGGTTGTTCATGGTGATTATGGGGCATTGGAACCTAATAAAATGGGGTTAGAAAGCGACTTTTCCCTTCCTCCACTAGAAAGTAGAAGCATTGAGGACAATTCTACTACCCCAATTGATGTGAAAAGCCATAACAACAACCACTTCAAGAATAGTTGCTTCAATAACACTGATCATCATATTCAAACCTCCAACAACGTAGTTGTGGAGGATATGTTTGGGTTTGGAAATCATGGGCAAGGGGAAAACTTTAGAATGGGAGAATGGGACTTTGAGGGTTTGATGCAAGACATGTCCTATTTCCCTTCCCTTGATTTCCAATGTACTTGTGTATATAATGAACATTGTTTGTACGTGCTCATTTTATGCATAGAATACTCTCTGGGATACCCAGATCTCAATTTTCTTCAGTTCTTCCATTCAAATACCAGGAAATTAGTTATGGCTCAACCTACAAACCTCACAAGAATAGGCCTAGCTGGTCTGGCTGTGATGGGCCAAAACCTTGCTCTCAACATAGCTGAAAAGGGCTTTCCCATTTCTGTTTACAACAGGACCACATCCAAGGTTGATGAAACGGTGGAAAGAGCACAAAAAGAAGGAAAACTTCCTGTGTATGGTTACCATGACCCTAAGTCCTTTGTTCAATCGATTCAAAAACCAAGGGTCATAATAATGCTTGTTAAGGCCGGGGCACCAGTGGACCAAACCATCAAGACCCTCTCTGCATACTTGGAAAAGGGCGATTGCATCATTGATGGTGGCAATGAGTGGTATGAGAACACTGAGAGAAGAGAGAAAGCTATGTCTGAATTGGGTCTACTCTACCTTGGAATGGGAGTCTCAGGTGGTGAGGAGGGAGCAAGACATGGTCCCTCTTTGATGCCCGGTGGTTCATTTGAGGCTTATAAATACATAGAAGACATTCTGCTAAAGGTGGCAGCTCAAGTGTCTGATAGTGGTCCTTGTGTGACTTACATTGGCCAAGGTGGATCAGGCAATTTTGTGAAAATGATCCACAATGGAATTGAGTATGGTGACATGCAACTCATTGCTGAGGCTTATGATGTGTTGAAGTCAGTTGGGAAGTTGTCAAATGAGGAGCTACAAAGTGTGTTCTCAGAGTGGAACAAAGGGGAACTCCTGAGTTTCCTCATTGAGATCACAGCAGACATATTTGGAATCAAGGATGACAAAGCAGAAGGGTATTTGGTTGACAAGGTTCTGGACAAAACTGGCATGAAGGGCACTGGCAAATGGACTGTGCAACAAGCTGCTGAGTTATCAATTGCTGCTCCCACAATAGAGGCTTCTTTGGATGCAAGGTTCCTCAGTGGATTGAAAGAGGAGAGAGTTGAAGCTGCAAAGTTGTTCAAGTCAAGAGGGTTAGATAGCATCTTGAATGACCAACACCAAACTGTTGACAAGAAGAAGCTGGTCGATGATGTTAGGAAGGCTCTCTATGCGGCAAAAATCTGTAGTTATGCACAGGGAATGAATCTGATCAGGGCAAAGAGCAAGGAGAAGGGTTGGGAGTTGAAGTTGGGGGAACTTGCAAGGATTTGGAAGGGGGGTTGCATCATAAGAGCCATATTTTTGGACAGAATCAAGAAAGCATATGATAGAAGTCCTAACCTTGCAAACCTTCTTGTGGATCCAGAATTTGCCAAGGAAATAGTGGATAGACAATCTGCATGGAGGAGAGTGGTGTGTCTAGCTATCAACTATGGTATTAGCACCCCAGGCATGGCTGCTAGTCTTGCTTATTTTGACACATACAGAAGGGAAAGTGTGCCAGCAAATTTGGTTCAGGCTCAGAGAGACTACTTTGGTGCTCATACATACGAGAGGATTGACATGGAGGGATCTTTCCACACTGAGTGGTTCAAGATTGCAAAACAGTCAAAGGTTTAG 2622 0.4409 MRKPDMMGKDKLNTTSTTTTTINTNSSTKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKISNNNSTSSPNNSDSSDPRDVMGGIMPMNEHDLMTMCMDSSSSTSSSSMQSMQANMALTDQFDPFPLLSNRYDMTTGASGFLDNMAACLTQVGMVDHDDGVVHGDYGALEPNKMGLESDFSLPPLESRSIEDNSTTPIDVKSHNNNHFKNSCFNNTDHHIQTSNNVVVEDMFGFGNHGQGENFRMGEWDFEGLMQDMSYFPSLDFQCTCVYNEHCLYVLILCIEYSLGYPDLNFLQFFHSNTRKLVMAQPTNLTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAQKEGKLPVYGYHDPKSFVQSIQKPRVIIMLVKAGAPVDQTIKTLSAYLEKGDCIIDGGNEWYENTERREKAMSELGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVSDSGPCVTYIGQGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQSVFSEWNKGELLSFLIEITADIFGIKDDKAEGYLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIEASLDARFLSGLKEERVEAAKLFKSRGLDSILNDQHQTVDKKKLVDDVRKALYAAKICSYAQGMNLIRAKSKEKGWELKLGELARIWKGGCIIRAIFLDRIKKAYDRSPNLANLLVDPEFAKEIVDRQSAWRRVVCLAINYGISTPGMAASLAYFDTYRRESVPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKIAKQSKV 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01515 873 Gene3D - 31 87 - -
Phco5g01515 873 MobiDBLite consensus disorder prediction 1 34 - -
Phco5g01515 873 MobiDBLite consensus disorder prediction 138 155 - -
Phco5g01515 873 ProSiteProfiles Myb-like domain profile. 29 81 IPR001005 -
Phco5g01515 873 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 136 IPR017930 -
Phco5g01515 873 FunFam Transcription factor MYB46 88 158 - -
Phco5g01515 873 FunFam MYB transcription factor 31 87 - -
Phco5g01515 873 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Phco5g01515 873 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 391 565 IPR036291 -
Phco5g01515 873 Pfam Myb-like DNA-binding domain 87 131 IPR001005 -
Phco5g01515 873 Pfam Myb-like DNA-binding domain 34 81 IPR001005 -
Phco5g01515 873 CDD SANT 89 132 IPR001005 -
Phco5g01515 873 Gene3D - 834 866 - -
Phco5g01515 873 NCBIfam decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase 393 865 IPR006113 GO:0004616|GO:0006098
Phco5g01515 873 Gene3D - 571 831 IPR013328 GO:0016491
Phco5g01515 873 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 567 867 IPR008927 -
Phco5g01515 873 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 81 IPR017930 -
Phco5g01515 873 Gene3D - 88 159 - -
Phco5g01515 873 Gene3D - 389 570 - -
Phco5g01515 873 SMART sant 86 134 IPR001005 -
Phco5g01515 873 SMART sant 33 83 IPR001005 -
Phco5g01515 873 CDD SANT 37 81 IPR001005 -
Phco5g01515 873 MobiDBLite consensus disorder prediction 138 162 - -
Phco5g01515 873 FunFam 6-phosphogluconate dehydrogenase, decarboxylating 833 866 - -
Phco5g01515 873 FunFam 6-phosphogluconate dehydrogenase, decarboxylating 389 570 - -
Phco5g01515 873 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE 388 870 IPR006183 GO:0004616
Phco5g01515 873 Pfam 6-phosphogluconate dehydrogenase, C-terminal domain 569 864 IPR006114 GO:0004616|GO:0006098
Phco5g01515 873 SUPERFAMILY Homeodomain-like 32 128 IPR009057 -
Phco5g01515 873 MobiDBLite consensus disorder prediction 10 33 - -
Phco5g01515 873 PRINTS 6-phosphogluconate dehydrogenase signature 391 414 IPR006183 GO:0004616
Phco5g01515 873 PRINTS 6-phosphogluconate dehydrogenase signature 456 485 IPR006183 GO:0004616
Phco5g01515 873 PRINTS 6-phosphogluconate dehydrogenase signature 558 586 IPR006183 GO:0004616
Phco5g01515 873 PRINTS 6-phosphogluconate dehydrogenase signature 754 776 IPR006183 GO:0004616
Phco5g01515 873 PRINTS 6-phosphogluconate dehydrogenase signature 509 534 IPR006183 GO:0004616
Phco5g01515 873 PRINTS 6-phosphogluconate dehydrogenase signature 640 667 IPR006183 GO:0004616
Phco5g01515 873 SMART 6PGD_2 569 865 IPR006114 GO:0004616|GO:0006098
Phco5g01515 873 FunFam 6-phosphogluconate dehydrogenase, decarboxylating 571 832 - -
Phco5g01515 873 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 392 561 IPR006115 GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01515 Phco-Chr5 50899509 50907061 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco5g01515 6PGD 3.6e-125 CL0106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01515 5 50899509 50907061 Phco3g03002 3 56291700 56293542 PCT