Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01509 ATGTTGAAGGAAGGCACCAACAACGTTGGTGGCAGCTCCAGCACCTGGTCACGTGTCTGCGACACGTGCCGGTCAGCGCCATGCATAGTGTACTGCCATGCAGACTCAGCATACCTGTGTTCATCCTGTGATGCTCGTGTCCATGCAGCTAACCGCGTGGCCTCAAGGCACGAGCGTGTGTGGGTGTGTGAAGCGTGTGAACGTGCTCCCGCAGCGTTTCTTTGCAAAGTTGACGCAGCTTCTCTTTGTTCTTCTTGTGATGCTGAGATTCACTCAGCAAACCCTCTAGCCAGCCGCCACCACCGTTTCCCCGTTCTCCCCATCTCGGGTCCCCTCTTGGGAGAACCAGATCACGAACCGGAACACAGATTCGTGAACGTGGTGGAAGAGGAAGAGGAAGAGTTTTTTCATGAGTATGACGATGAGATTGAAGCTGCTTCGTGGTTGTTGCCACATCCTGTGAAAGGCAACGAAGAGGAGGAGAATGGTTTTATGTACAGTAATGAGTATTTGGAGAACCTTGTGGATTGTAACTCGTGCGGTCACAATAATAACCAGTTTAGCAACGTTTTTCTGCACCAACAGAACTACAACACTGTCCCTCAGAACTATGCAGTGGTTCCAGTTCAGGTGCTGCAACAATCGCAGCATTTTCAACCGGGTTTGGAGTTTGACTCATCAAAAGCTGGTTTCAGTTACGATGGTTCTCTTAGCCAAAGTGTATCAGTTTCATCAATGGAAGTTGGTGTAGTCCCAGAATCAACAATAAGTGACATCTCAGTGTCCTATTCAAAGTCACCAATAGGGACAAGTGACCTATTTCCTCCCCTTCCCATGCCTTCACATCTTACACCAATGGACAGAGTGGCCAGAGTCCTAAGATACAGGGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAAATAAGGTATGCCTCAAGGAAGGCTTATGCAGAAACTAGACCACGCATCAAGGGTAGATTTGCAAAGAGAACTGATGTGGAAGCTGAAGTGGACCAAATGCTCTCCAAAACACTATTCAATGAAGTTGGTGGTACAATTTTCCATCATTCGAGGAATGGAAAGAAAAGAAATTATAAATAG 1101 0.4687 MLKEGTNNVGGSSSTWSRVCDTCRSAPCIVYCHADSAYLCSSCDARVHAANRVASRHERVWVCEACERAPAAFLCKVDAASLCSSCDAEIHSANPLASRHHRFPVLPISGPLLGEPDHEPEHRFVNVVEEEEEEFFHEYDDEIEAASWLLPHPVKGNEEEENGFMYSNEYLENLVDCNSCGHNNNQFSNVFLHQQNYNTVPQNYAVVPVQVLQQSQHFQPGLEFDSSKAGFSYDGSLSQSVSVSSMEVGVVPESTISDISVSYSKSPIGTSDLFPPLPMPSHLTPMDRVARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMLSKTLFNEVGGTIFHHSRNGKKRNYK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01509 366 Pfam CCT motif 288 330 IPR010402 GO:0005515
Phco5g01509 366 CDD Bbox1_BBX-like 19 62 - -
Phco5g01509 366 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Phco5g01509 366 Pfam B-box zinc finger 60 101 IPR000315 GO:0008270
Phco5g01509 366 ProSiteProfiles CCT domain profile. 288 330 IPR010402 GO:0005515
Phco5g01509 366 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Phco5g01509 366 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 20 343 IPR045281 GO:0009909
Phco5g01509 366 SMART bboxneu5 63 105 IPR000315 GO:0008270
Phco5g01509 366 SMART bboxneu5 15 62 IPR000315 GO:0008270
Phco5g01509 366 CDD Bbox1_BBX-like 62 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01509 Phco-Chr5 50846572 50848701 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Phco5g01509 CCT 7.6e-17 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01509 5 50846572 50848701 Phco3g03011 3 56332021 56334325 PCT