Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01506 ATGGGAAAGCTAAGAGGAAGAGAAGCTGCTATTTGTTTAGTGGTTTTCTTCTGGTTTTGGAGCTCTTCCAATGCTTTGCTTTCTCCAAAGGGAGTAAACTTTGAAGTGCAAGCTTTAATGGGCATAAAAGCTTTTCTTGTGGATCCCCATGGTATTCTAGATAATTGGGACGGGGATGCAGTTGATCCATGCAGCTGGAATATGGTCACGTGTTCCCCTGAGAATCTTGTTATTAGCCTGGGCATTCCCAGTCAAAATTTATCTGGTATTCTATCTCCAAGCATAGGAAACCTGACAAATCTTCAGACTGTGGTGCTACAAAATAACAACATAACTGGACCAATCCCTTCAGAGATAGGAAAACTTTCCAAGCTTCAAACTCTTGATCTCTCTGACAACTTCTTCAATGGGGAGATTCCTCCCTCTCTGGGTCACCTGAGAAGCCTACAGTACTTGAGGCTTAATAATAACAGTTTTGATGGAGAATGCCCAGTTTCACTTGCTAACATGGCGCAGCTTGCTTTTCTTGACTTGTCCTACAATAATCTGAGTGGCCCTATTCCTAGAATTTTGGCCAAATCGTTCAGTATTGTAGGAAACCCTTTAGTCTGCACCACTGAAAAAGAAAAAAATTGCCATGGGATGACACTTATGCCCATGTCAATGAACTTGAACAGTTCTGAGAATGCTTTACCATCTGGTAGAACAAAGGCTCACAAAATGGTCATTGCCTTTGGTCTGAGTCTTGGATGCCTCTGCTTGATAGTTTTTGGTCTTGGATTTATTCTATGGAGGAGGCACAAGCGTAAACAACAGTCATTCTTTGATGTTAAAGACCAGCATCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTCCAATTAAGAGAACTCCAGATTGGTACTAACAACTTCAGCAACAAAAACATTCTCGGCAAGGGTGGTTTTGGAAATGTCTACAAGGGAATTCTCCCAGATGGCACTCTTGTGGCAGTCAAGAGGCTTAAAGATGGCAGTGCCACTAGAGGAGATATTCAATTTCAGACTGAAGTTGAAATGATCAGCTTGGCGGTGCACCGAAACCTCCTCAAACTGTATGGATTTTGCATGACACCAACAGAAAGGCTTTTGGTTTATCCTTACATGTCCAATGGCAGTGTTGCTTCTAGGCTCAAGGGTAAGCCAGTGTTGGATTGGGGCACAAGAAAGCAAATTGCCATAGGAGCCGCAAGGGGACTGCTATACCTTCATGAGCAGTGTGATCCAAAGATAATCCACAGAGATGTGAAGGCTGCAAATATATTGCTTGATGACTATTGTGAGGCAGTGGTAGGGGATTTTGGGTTGGCAAAGCTTTTAGATCATCAAGATTCACATGTTACAACTGCAGTGAGGGGCACGGTGGGGCATATAGCACCAGAGTATCTTTCCACAGGGCAATCTTCTGAGAAGACTGACGTCTTTGGATTTGGCATTCTGCTTCTTGAATTGATCACAGGCCAGAGGGCACTGGAATTTGGAAAAGCAGCCAACCAAAAAGGAGCCATGCTTGATTGGGTAAGGAAAATCCATCAAGAGAAGAAGCTTGAGTTGCTTGTGGACAAGGATCTCATGAACAACTATGACAGGATTGAGCTTGAGGAAATTGTTCAAGTGGCACTCTTGTGCACACAATATCTTCCTGGCCATAGGCCCCGAATGTCTGAAGTTGTACGCATGCTTGAAGGTGATGGCCTTGCAGAGAAATGGGAAGCTTCTCAAAGTGCTGAAACCACCAAATGCAACAAACCACATGAACTCTCTTCATCAGATAGGTATTCTGACCTCACTGATGACTCTTCTTTGTTGGTTCAAGCAATGGAACTCTCAGGCCCCAGATGA 1881 0.4359 MGKLRGREAAICLVVFFWFWSSSNALLSPKGVNFEVQALMGIKAFLVDPHGILDNWDGDAVDPCSWNMVTCSPENLVISLGIPSQNLSGILSPSIGNLTNLQTVVLQNNNITGPIPSEIGKLSKLQTLDLSDNFFNGEIPPSLGHLRSLQYLRLNNNSFDGECPVSLANMAQLAFLDLSYNNLSGPIPRILAKSFSIVGNPLVCTTEKEKNCHGMTLMPMSMNLNSSENALPSGRTKAHKMVIAFGLSLGCLCLIVFGLGFILWRRHKRKQQSFFDVKDQHHEEVYLGNLKRFQLRELQIGTNNFSNKNILGKGGFGNVYKGILPDGTLVAVKRLKDGSATRGDIQFQTEVEMISLAVHRNLLKLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKQIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVRKIHQEKKLELLVDKDLMNNYDRIELEEIVQVALLCTQYLPGHRPRMSEVVRMLEGDGLAEKWEASQSAETTKCNKPHELSSSDRYSDLTDDSSLLVQAMELSGPR 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01506 626 Pfam Protein kinase domain 306 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01506 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Phco5g01506 626 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Phco5g01506 626 MobiDBLite consensus disorder prediction 586 608 - -
Phco5g01506 626 ProSiteProfiles Protein kinase domain profile. 305 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01506 626 FunFam Somatic embryogenesis receptor kinase 1 274 381 - -
Phco5g01506 626 FunFam Somatic embryogenesis receptor-like kinase 1 382 594 - -
Phco5g01506 626 Gene3D Ribonuclease Inhibitor 32 214 IPR032675 -
Phco5g01506 626 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Phco5g01506 626 Pfam Leucine Rich repeats (2 copies) 99 140 IPR025875 -
Phco5g01506 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 585 - -
Phco5g01506 626 FunFam Putative LRR receptor-like serine/threonine-protein kinase 32 214 - -
Phco5g01506 626 SUPERFAMILY Protein kinase-like (PK-like) 282 575 IPR011009 -
Phco5g01506 626 Gene3D Transferase(Phosphotransferase) domain 1 382 594 - -
Phco5g01506 626 Gene3D Phosphorylase Kinase; domain 1 274 381 - -
Phco5g01506 626 SMART serkin_6 305 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01506 626 SUPERFAMILY L domain-like 35 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01506 Phco-Chr5 50828767 50833394 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Phco5g01506 Pkinase 1.4e-43 CL0016