Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01440 ATGAGAGATTCATTACACTTCAGGAATGGTGGTTGTGGGTTCACTGCTGAAATGAATGTTTTCCCTTCAGCTCCTGTTACTGTTATTGGTCTCCAGTGTTTCAACAGTTTAGGGGTGATGGGTCATGTTGGAGGCAAGAAATCTGAAAGTTCTGATATACCCTTTCAGATTTTGAACCCTTTGGTGATCCATCGCTCTGAGGAGGAAGAAGCATCTTTTGGGGTTGAAACCATGAGCTTGTCTTTGAAATCTGGTGAAGAGCTTGAAGCTAATAGTTATTCTGCTACAGAGAAAATTAGACACACTAAGCTTTGTGCCAGAGGACATTGGAGACCAGCTGAAGATGTCAAACTTAAAGAGCTTGTTGCACAATTTGGACCTCAAAATTGGAACTCAATAGGGGAACATCTTCCAGGAAGATCAGGAAAAAGTTGCAGATTGAGGTGGTTTAACCAGCTAGATCCAAGAATTAACAGAAAGGCTTTCAGTGAGGAAGATGAGGAGAGACTCTTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCATGATATCTAGACTCTTCCCAGGTAGGACAGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAGAAGTCATGTGTCTACAAAAGGAGAAAGCCCACATTTCAGATCCTGCCACCAAAGGATTTGGATTTGACCTTGCCAAGGAATGGAAGCAGTGAATCAACCATTTCAAGCACCATCATTGATGAATCTGCCTCAACAGGAACTAACCTCTCCTTCATTCCCTCTTCAACCAAACCAACTCCTCTGCCTTTCCACAACCATTGTTCTGTTCAGAATCTCCAACCCTTTGGTGCTCTAATGGATTTATCTGGAGAAAACAGGACAACAGCCAGAAATGGGAGTTTTAACAAGCATATTGGTGCTTGGAAAGGTTCATGTGAGGCTGGACACATGGGAAGGCTCATGGGTGTGGACCAATCCCATTGCTCGGATTCAAACTCATCAGAAGTTTCAGTATCTGAGTCAGTTGCCACCAACAAGATTACCAATCTCTCACTGTATGAGAAAAGTGATAATAGGGCCAACATGTTATTCATTGACTTTCTTGGAGTAGGAGCTACATAA 1131 0.4288 MRDSLHFRNGGCGFTAEMNVFPSAPVTVIGLQCFNSLGVMGHVGGKKSESSDIPFQILNPLVIHRSEEEEASFGVETMSLSLKSGEELEANSYSATEKIRHTKLCARGHWRPAEDVKLKELVAQFGPQNWNSIGEHLPGRSGKSCRLRWFNQLDPRINRKAFSEEDEERLLNAHKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREKSCVYKRRKPTFQILPPKDLDLTLPRNGSSESTISSTIIDESASTGTNLSFIPSSTKPTPLPFHNHCSVQNLQPFGALMDLSGENRTTARNGSFNKHIGAWKGSCEAGHMGRLMGVDQSHCSDSNSSEVSVSESVATNKITNLSLYEKSDNRANMLFIDFLGVGAT 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01440 376 ProSiteProfiles Myb-like domain profile. 107 153 IPR001005 -
Phco5g01440 376 PANTHER MYB PROTEIN-RELATED 107 328 - -
Phco5g01440 376 Pfam Myb-like DNA-binding domain 107 153 IPR001005 -
Phco5g01440 376 Pfam Myb-like DNA-binding domain 159 202 IPR001005 -
Phco5g01440 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 154 208 IPR017930 -
Phco5g01440 376 CDD SANT 161 201 IPR001005 -
Phco5g01440 376 SMART sant 106 155 IPR001005 -
Phco5g01440 376 SMART sant 158 206 IPR001005 -
Phco5g01440 376 ProSiteProfiles Myb-like domain profile. 154 204 IPR001005 -
Phco5g01440 376 Gene3D - 160 219 - -
Phco5g01440 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 153 IPR017930 -
Phco5g01440 376 Gene3D - 107 158 - -
Phco5g01440 376 FunFam MYB transcription factor 107 158 - -
Phco5g01440 376 SUPERFAMILY Homeodomain-like 107 200 IPR009057 -
Phco5g01440 376 CDD SANT 110 151 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01440 Phco-Chr5 49877033 49878503 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco5g01440 Myb_DNA-binding 1.5e-14 CL0123