Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01439 ATGAGTAACTCACTACACTTCAGGAATAGTGGTTGTGGGTTCAGTGCTGAAATGAATATTTTCCCTCCACCTCCTGTTCCTGTCCTTGCTCTCAAGTGTTCAAACACTTTGGGGTTCACGGGTGGAGGCACAGAAGCTGAAAGTTCTGACATGCCCTTTCATTCGAACTCCTCAGTGATCCAACACCAGGAGGAGGAGGAAGAGGAGGAAGAAGAATCTTTTGGGGTTGAGAACAAGAGTTTGTCTCTAAAACCTGGTGAAGAGCTTGAAGCTAATAGTTCTTCTGCCACAGGGAAAATTAGACAAACTAAGCTTTGTGCTAGAGGACATTGGAGGCCAATTGAAGATGACAAACTTAAAGAGCTTGTTGCACAATTCGGTCCGCAAAATTGGAACTCAATCGCAGAACATCTTCCAGGAAGATCAGGCAAAAGTTGCAGATTGAGGTGGTTTAATCAGCTAGATCCAAGAATTAACAGAAAGGCTTTCAGTGAGGAAGAAGAGGAGAGACTCTTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCATGATATCTAGACTCTTCCCAGGTAGGACAGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAGAAGTCATGTGTCTACAAAAGGAGAAAGCCCACATTTCAGATCCTGCCACCAAAGGATTTGGATTTGACCTTGCCAATGAATGGAAGCAGTGAATCAACCATTTCAAGCACCATCATTGATGAATCTGCCTCAACAGGAACTAACCTCTCCTTCACTCCCTCTTCAACCAAACCAACTCCTCTGCCTTTCCACAACCATTGTCCTGTTCAGAATCTCCAAGCCTTTGGTGCTCTAATGGGTTTATCTGGAGAAAGCGAGACACTAGCCAGGGAGGTGGGTTTTGGCATGTATTTTGGTGCTTGGAAGGGTTCATTTGAGGCTGGACACATGGGAAGGCTAATTGGTGTGGATCACTGCTATTATTCAGAGTCAAACTCATCAGAAGTTTCAGTATGTGAGTCAGTTGCCAACAACAGCGCTACCAATCTCTCAATTTCTAGGGAAAATGAAAACATGGGTCATAACAAGGCCAACATGATATTCATTGACTTTCTTGGAGTAGGAGCTGCATAA 1146 0.4424 MSNSLHFRNSGCGFSAEMNIFPPPPVPVLALKCSNTLGFTGGGTEAESSDMPFHSNSSVIQHQEEEEEEEEESFGVENKSLSLKPGEELEANSSSATGKIRQTKLCARGHWRPIEDDKLKELVAQFGPQNWNSIAEHLPGRSGKSCRLRWFNQLDPRINRKAFSEEEEERLLNAHKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREKSCVYKRRKPTFQILPPKDLDLTLPMNGSSESTISSTIIDESASTGTNLSFTPSSTKPTPLPFHNHCPVQNLQAFGALMGLSGESETLAREVGFGMYFGAWKGSFEAGHMGRLIGVDHCYYSESNSSEVSVCESVANNSATNLSISRENENMGHNKANMIFIDFLGVGAA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01439 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 154 IPR017930 -
Phco5g01439 381 ProSiteProfiles Myb-like domain profile. 108 154 IPR001005 -
Phco5g01439 381 Gene3D - 161 220 - -
Phco5g01439 381 MobiDBLite consensus disorder prediction 42 96 - -
Phco5g01439 381 CDD SANT 111 152 IPR001005 -
Phco5g01439 381 MobiDBLite consensus disorder prediction 42 59 - -
Phco5g01439 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 155 209 IPR017930 -
Phco5g01439 381 FunFam MYB transcription factor 108 159 - -
Phco5g01439 381 CDD SANT 162 202 IPR001005 -
Phco5g01439 381 PANTHER MYB PROTEIN-RELATED 108 270 - -
Phco5g01439 381 ProSiteProfiles Myb-like domain profile. 155 205 IPR001005 -
Phco5g01439 381 SUPERFAMILY Homeodomain-like 108 201 IPR009057 -
Phco5g01439 381 Pfam Myb-like DNA-binding domain 108 154 IPR001005 -
Phco5g01439 381 Pfam Myb-like DNA-binding domain 160 203 IPR001005 -
Phco5g01439 381 SMART sant 107 156 IPR001005 -
Phco5g01439 381 SMART sant 159 207 IPR001005 -
Phco5g01439 381 Gene3D - 108 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01439 Phco-Chr5 49846998 49848567 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco5g01439 Myb_DNA-binding 2.1e-15 CL0123