LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco5g01434	ATGTCTAATAAGGATCCGGGTATTAGGCTCTTTGGCAGGAAGATTCCGTTGCCGGAATCTCAGATTCCGGCCAGTTCTCAGATGGGGTATCAGATTCAGGCCAACTCTGCAACCATGAATGCTTGCGGTGGCTTAAAGAAAAAAGAAGTTGAAATGCCCTATACTGAAAACTCTGAGCAACCAGAGAATTATTCTGATTCAAGGGATAGCAAACAAGAGTTCCCAGATAATAATAATCAGCAGGAAAATGGGTCAAAAGTAAATACCAAAACTGTGGAAAATAATACAGAGAGTAGCAGTACAGATGAAGATAAAATCTTCAAGAAACCAGACAAGATTCTTCATTGTCCCCGATGCAACAGTTTAGACACTAAATTCTGTTATTTCAATAACTACAATGTCAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGATATTGGACTGCAGGTGGAACGATGAGAAATGTTCCTGTGGGTGCTGGGAGACGAAAGAACAAGCACCTAGCTTCTCAATACCGGCAGATTATTGTATCTTGTGATGGAGTTCCAACTACAAACGACTCTTCTTGTCACCAACTTGTCACAACTCTTCAATCTGCTGCTGTTTTCAGGTCTTCAACGGATAATGGTACTGTGCTGAAATTTTGCCCGGATGCCCCTGCTCTTTGTGAATCCATGGAGTCAATGCTTAATCTTAAAGAACAAAATCGAAGTGTTGATGAAAATACTGTCAATTGTGCAGAAAAAGTGGAGGAGGAAGTATCCCTTTGTGCATCAGCATCTATGACCAATGCTTGTAGTGCAAGAAACACATTAACTGAACCTGCTGCATCAAAACCTTTGCAGTGTTATCCTGTTCCTCCGTGGATATTCCCTTGGAATCAAGATTGGAACAATGTTGCTTCCACTGCATCAGTTCAACCCTCTTCACTACACATGTGTAACCCTTATAGTGCCGACCCCGCTTCAATGCAGTGGTGTCCTACACCGATGATGGCTGTTCCAACCATCTGCCCACCAAGCTTTCCTTTGCAATTTGTTCCTGCATCATACTGGGGTGGACAACCTATGTGGGGTGGTGGAACAGGAGCAGTTTCAATGGGTTTCAATGCCTGCCTTTCACCTACTTCCTCTACCAGTAATAGCTGTTGCTCGGGCAACGGCTCCCCAACACTTGGCAAACACACAAGAGATAACAATGTTTCAACAGATGAAGACAAATCAGACATGTGTGTCTTGGTTCCAACGACTCTTAGAATTGATGATCCAAATGAGGCTGCAAAATGTTCTACACTGGCTTCATCAGGAGTCAAGCCTGAAAACCAGCAATGTGTAGCAGAAGGTACTATTTCAAAAAGGGCAAAGCCTAGAGAAGGCAAAGAGCGTGTGTTGGGTGTGTCTCAAATCCTGGAAGCTAACCCTGCAGCTATTTCTCGTGCTCATGCATTCCAAGAGGGCATATAA	1467	0.4349	MSNKDPGIRLFGRKIPLPESQIPASSQMGYQIQANSATMNACGGLKKKEVEMPYTENSEQPENYSDSRDSKQEFPDNNNQQENGSKVNTKTVENNTESSSTDEDKIFKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRQIIVSCDGVPTTNDSSCHQLVTTLQSAAVFRSSTDNGTVLKFCPDAPALCESMESMLNLKEQNRSVDENTVNCAEKVEEEVSLCASASMTNACSARNTLTEPAASKPLQCYPVPPWIFPWNQDWNNVASTASVQPSSLHMCNPYSADPASMQWCPTPMMAVPTICPPSFPLQFVPASYWGGQPMWGGGTGAVSMGFNACLSPTSSTSNSCCSGNGSPTLGKHTRDNNVSTDEDKSDMCVLVPTTLRIDDPNEAAKCSTLASSGVKPENQQCVAEGTISKRAKPREGKERVLGVSQILEANPAAISRAHAFQEGI	488

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco5g01434	488	ProSiteProfiles	Zinc finger Dof-type profile.	114	168	IPR003851	GO:0003677\|GO:0006355
	Phco5g01434	488	MobiDBLite	consensus disorder prediction	1	26	-	-
	Phco5g01434	488	PANTHER	CYCLIC DOF FACTOR 2	3	486	IPR045174	GO:0003700\|GO:0006355
	Phco5g01434	488	ProSitePatterns	Zinc finger Dof-type signature.	116	152	IPR003851	GO:0003677\|GO:0006355
	Phco5g01434	488	MobiDBLite	consensus disorder prediction	388	408	-	-
	Phco5g01434	488	Pfam	Dof domain, zinc finger	111	168	IPR003851	GO:0003677\|GO:0006355
	Phco5g01434	488	MobiDBLite	consensus disorder prediction	49	105	-	-
	Phco5g01434	488	MobiDBLite	consensus disorder prediction	76	96	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco5g01434	Phco-Chr5	49778654	49781234	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-Dof	Phco5g01434		zf-Dof	5.2e-32	No_clan