Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01419 ATGCGTTATGTTCCAAGGTGTACAATGAGACATTTTTTTTCCCTTTATCTTGTGGTTCTTTCATGGTTCTTTTTCATCCCAAACACTCAGGAATTACAAGCTGCTCAGACACAAGCCTTGTTGCAGTTAAGAGTTCATCTAGAGTATCCTTCCTCTTTACAAATTTTGGACTATTACCAGGGGGACCTGTGCTGGCTCTCTCCATCTGCAAACCTGAGCATTAAATGTGAAGATGATGAGGTAACTGAGCTTAAAATTACGGGTGAAAAATCTTTGAAGCCACCATGGTTCAAAGGATATGCAGTTCCTAATCAGACTCTATCCATGAATTTCTCCATTGATTCCTTTTTCATCACTTTGACAAGGTTGACCAGCTTAAGGGTTCTTAGCTTGGTGTCCTTGGGGATTTGGGGGCCACTTCCTGATAAGATTCACAGTTTCACTTTGCTTCAAGTTTTGGACTTGAGTTCCAATTTCTTATTTGGAGACATTCCACCCAAAATATCCACAATGGTAAAGCTTCATGCACTGACCCTTGATGACAATTATTTTAACACCACTATGCCCGATTCGTTTGATTCTCTGTCCAATCTGAATATCTTGAGTGTGAAGAGCAATGGTTTAAAGGGTTCATTCCCCTCCTCACTGGGAAAAATTAAGACACTTGAAGTTATTTCCTTGTCCCACAATGAGTTGTCTGGTGACTTGCCTGGTCTCAGTTCTCTCACTGGACTACATGTTCTGGATTTAAGAGAAAACCATTTAGAATCTGAACTACCATTGTTGCCTAAATCTGTGGTCACTGTGCTGCTTAGCAATAACTCGTTTTCAGGAGAGATACCTAAGCAGTTTCATGAACTGGATCAGCTTCAACATCTAGATCTTTCTTCAAATTACCTCAGTAAGACACCACCATCTACCTTGTTTTCTCTACCAGAAATAAGTTATTTGAATCTGGCGAGCAATGTGCTAAGTGGGACCCTCCCAGACAAACTTAACTGTGGTAGCAAACTTGGGTTTGTGGACATTTCTCGTAACAAGTTAAGCGGTGGACTTCCTTCTTGCTTGGCGAATACATCTGATAGCAGAGTTGTTAGATATGCTGGAAACTGTTTATCTGTTGATTCTCAGAACCAGTATAGAGGGTCCTATTGTAAAGAATCTTCCTCTGGATGGAAAAGCTTCAAGACATGGGAAGTAGCTGTAGTAATGGTCATCATCGTTGTACTTGTTCTTGTGCTTTTGGGGTCGAGCGTCTTCTTATGGAAAAAGTATCATTCCAGAAAGACAACTGGGCAAGATAACTCCTCAATAGGAGTTCCATCAGAGATCCTTGCAAATGCCAGATTTATTTCTCAAACAATGAAGCTAGGGACACAAACTATTCCAACCTGTCGTCAATTTTCAATAGAGGAACTCAAGGAAGCCACAAAAAACTTTGACTTGTCAACTTATATTGGTCAAGGCTCCATTGGCAAGATGTACAAAGGTAAACTGGATAATGGATCCTACGTGGCAATACGGTCTTTGGCTCTGTCAAAGAAATGCTCGATTCAAACTCTCAGAGCTAAACTGGATTTACTCTCAAAACTTCATCATCCAAATTTGGTTAGCCTTTTGGGGCATTGTATTGATGGTGGAGGACAAGATGATTCCAATTCCCACAAACTTCATCTTGTATATGAGTATGTGCCAAATGGGAATTATCATGCCCATCTGTCAGAATTTTCTGTAGGGAAGGCAATTAAGTGGTCTGATAGATTGGCAATTTTAATTGGAGTTGCAAAGGCAGTGCATTTCTTACACACTGGTGTTATACCTGGCTGCTTTAGTAACCTACTAAAGACAAAGAATGTCTTGCTTGATGAACACCGCATTCCAAAACTAAGTGACTATGGCATGTCCATTATCACAGAAGAAATTGAAAAGTTTGAGGCAAAGGGTGAGAAATCAAAGCCATGCCTAAGGACAAAAGCAGATGATGATGTTTATAATTTTGGATTCATATTGTTCGAATCACTTGTTGGACCTATAGCATGCGACAAAGGTGAAACATTTTTCCTAAATGAAAAGGCATCCTTTGGCAGTCAAGATGGTAGAAGAAAGATTGTGGATCCTACAGTGTTGACCACTTGCTCTCAAGAGTCATTATCAATTGCAATATCAATAACAACCAAATGCATATCTCCAGAATCTTCCTTTCGTCCCTCTTTTGAGGATGTCCTATGGAACTTACAGTATGCAGCTCAAGTTCAAGCCACAGCAGATGCAGACCAGAAATCAGATTAA 2289 0.401 MRYVPRCTMRHFFSLYLVVLSWFFFIPNTQELQAAQTQALLQLRVHLEYPSSLQILDYYQGDLCWLSPSANLSIKCEDDEVTELKITGEKSLKPPWFKGYAVPNQTLSMNFSIDSFFITLTRLTSLRVLSLVSLGIWGPLPDKIHSFTLLQVLDLSSNFLFGDIPPKISTMVKLHALTLDDNYFNTTMPDSFDSLSNLNILSVKSNGLKGSFPSSLGKIKTLEVISLSHNELSGDLPGLSSLTGLHVLDLRENHLESELPLLPKSVVTVLLSNNSFSGEIPKQFHELDQLQHLDLSSNYLSKTPPSTLFSLPEISYLNLASNVLSGTLPDKLNCGSKLGFVDISRNKLSGGLPSCLANTSDSRVVRYAGNCLSVDSQNQYRGSYCKESSSGWKSFKTWEVAVVMVIIVVLVLVLLGSSVFLWKKYHSRKTTGQDNSSIGVPSEILANARFISQTMKLGTQTIPTCRQFSIEELKEATKNFDLSTYIGQGSIGKMYKGKLDNGSYVAIRSLALSKKCSIQTLRAKLDLLSKLHHPNLVSLLGHCIDGGGQDDSNSHKLHLVYEYVPNGNYHAHLSEFSVGKAIKWSDRLAILIGVAKAVHFLHTGVIPGCFSNLLKTKNVLLDEHRIPKLSDYGMSIITEEIEKFEAKGEKSKPCLRTKADDDVYNFGFILFESLVGPIACDKGETFFLNEKASFGSQDGRRKIVDPTVLTTCSQESLSIAISITTKCISPESSFRPSFEDVLWNLQYAAQVQATADADQKSD 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01419 762 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 564 762 - -
Phco5g01419 762 Pfam Leucine rich repeat 173 232 IPR001611 GO:0005515
Phco5g01419 762 Pfam Leucine rich repeat 267 324 IPR001611 GO:0005515
Phco5g01419 762 ProSiteProfiles Leucine-rich repeat profile. 221 243 IPR001611 GO:0005515
Phco5g01419 762 ProSiteProfiles Leucine-rich repeat profile. 289 310 IPR001611 GO:0005515
Phco5g01419 762 SUPERFAMILY Protein kinase-like (PK-like) 460 745 IPR011009 -
Phco5g01419 762 Gene3D Ribonuclease Inhibitor 33 264 IPR032675 -
Phco5g01419 762 Gene3D Transferase(Phosphotransferase) domain 1 564 762 - -
Phco5g01419 762 SUPERFAMILY L domain-like 91 373 - -
Phco5g01419 762 PANTHER LEUCINE RICH REPEAT KINASE 2 116 260 - -
Phco5g01419 762 Gene3D Ribonuclease Inhibitor 265 378 IPR032675 -
Phco5g01419 762 Gene3D Phosphorylase Kinase; domain 1 451 563 - -
Phco5g01419 762 ProSiteProfiles Protein kinase domain profile. 480 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01419 762 Pfam Protein tyrosine and serine/threonine kinase 482 742 IPR001245 GO:0004672|GO:0006468
Phco5g01419 762 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 33 264 - -
Phco5g01419 762 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 443 563 - -
Phco5g01419 762 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 266 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01419 Phco-Chr5 49579111 49583374 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Phco5g01419 PK_Tyr_Ser-Thr 1.5e-19 CL0016