Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01397 ATGGGAAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGCCCATGGACTATTGAGGAAGATCACAAGCTTATGAATTTCATTCTCAACAATGGTATTCAATGCTGGAGAGCAGTTCCCAAGCTAGCAGGATTGTTGAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGACCAGACCTCAAGAGAGGTGGATTTACTGAAATGGAAGAGGATCAAATTATACAACTACATTCATGTTTTGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCAGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAAAATCAAAAAGAGGTTGAAGCTCCTTGGTTTGGACCCTTTCACCCTGATGCCTATTGAGCAAAAGGAAAAGTCTGGTGCTGACAAAGTTAAGACAGACATGCAGCCAAAAAGCACTTCAAATGGATCTGACCAAGGTGTGGAGAACAAGTCCTTGGACATGCATGCCACAGTAGAAGAGCCAAAAACAGAAGAGAAAATGGAAGAAAGCAAGGTCACATGGGATGATACCACTGGATTTTTGAACAATTATGAAGTTTTGTGCTCACAGTTGGACTTGGGATCATGGATGAGGCAAGAAACCAAAGCCAGCACTAGTTCTTATTGTAGTTCTTCTTTCTCACTGGATGATTCCAGCAACTTTTCTGTGGATGAATCGTCTTATCTTCAGGAAAATTCCTTGCAACAATGGGTTGAGGGTTTGGATTCCATTCTCTCATGGGATAACTTCAGTCCACTTCAGAAAGATTTTCCCTTCTTGGAAAATAGGCAATAA 825 0.4109 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIQCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSCFGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKLLGLDPFTLMPIEQKEKSGADKVKTDMQPKSTSNGSDQGVENKSLDMHATVEEPKTEEKMEESKVTWDDTTGFLNNYEVLCSQLDLGSWMRQETKASTSSYCSSSFSLDDSSNFSVDESSYLQENSLQQWVEGLDSILSWDNFSPLQKDFPFLENRQ 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01397 274 Gene3D - 11 67 - -
Phco5g01397 274 MobiDBLite consensus disorder prediction 163 180 - -
Phco5g01397 274 FunFam MYB transcription factor 11 67 - -
Phco5g01397 274 CDD SANT 16 61 IPR001005 -
Phco5g01397 274 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco5g01397 274 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco5g01397 274 Gene3D - 69 149 - -
Phco5g01397 274 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Phco5g01397 274 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco5g01397 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco5g01397 274 CDD SANT 70 110 IPR001005 -
Phco5g01397 274 MobiDBLite consensus disorder prediction 132 180 - -
Phco5g01397 274 FunFam MYB transcription factor 68 129 - -
Phco5g01397 274 SMART sant 13 63 IPR001005 -
Phco5g01397 274 SMART sant 66 114 IPR001005 -
Phco5g01397 274 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Phco5g01397 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco5g01397 274 MobiDBLite consensus disorder prediction 142 160 - -
Phco5g01397 274 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01397 Phco-Chr5 49220740 49221965 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco5g01397 Myb_DNA-binding 7.9e-12 CL0123