Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01391 ATGTGTGTATTCTGCTGTCTGTCATGTGTTGCTGCTGCATTATTCTCCCTTACATGTTTTCCTTGTGTATATTTTGAACACAGGTTGATGGAAGGTACTGAACCTGATATAGAAAGGCAGCCCCTGGAAGATGCAGAAAAAAAATGTCCAATATCTGCCGAGGTGGTAATTGATATGGGGCAAGAGAGTCAGACTCGGAATCCCAGTGATTCTTCTGTAGTAGACACTATTAAGGTCATTGACACTGGGAATGAGTGTACAGATCCGAATGTTTGTCCTGTTGACTGTAGTCACATGGAAATTAATGATGAAGGCCAGACATCAAATATTTTCCATGATGACAAATTTCATAATGATAATGTCAATAGTGGACAGCTGTGTGAGAACCCCTGCGCTACCTCTGTTAATGTATCAATGACTAGTATTGATGTGAAAAATGAGGACGAAATATATGTGGCACCAAAGATTGGTATGGAGTTTGAATCAGAAGACAATGCTTACAAATGTTATAGCATGTATGCTGTCCAGAAAGGTTTTAGCGTAAGAAAGGATTTTGTTAACAAAAGTAGGATAAATGGTGCAGTGGTATCCAGAAGATACACCTGCCATAGACAGGGTTATCGGCCAAACAAAAGTGGTACATTCTTGAGGAAATTTCAGCAGGAAACAAGAACTGGTTGTTTGGCACACATGACTATTGCTTGTCAGCCGAATGGCAAGTTTCAGGTCACTCATTTTGAAACTGAGCACAATCATGAGTTTGTAACACCCTGTACTGCTCATATGTTACCATCACAGAAAAGATTGAGTTTTGCTCAAGCTATTGAAGCAAACTTAACTGTATCCGGGTTAGATGAGGTACCAAAACTGGGAATGGGATTTGACTCAGACGAGCATGCATATGAATTTTATAATACATATGCTGGACGTGTTGGTTTCAGTGTAAGAAAAGATTATGTAAATAGGAGTAAAATTGATGGTGCTGTGGCATCTAGACGATTTACTTGCTTCAGAGAAGGTTTTCGGCAGAAAGACAGACGACATATGAATGTAAAGAGACCTCGGAAGGATACTAGAATTGGATGTTTGGCCCAACTGGTTATTTCTCGCCAACCTGATGGTAGGTATCATGTTACGCACTTTGAAGAAAAGCATAATCATGAACTTGTTGCTGCATGTAGAGTGCACATGTTAAGATCACAAAAGGGGCTAACTGCTACTCAAATTGAAAAGAACTTAGTAGATGGGTCCAACGTGCTGCCTACATCAACCTCTGAAACCAATTGCAAGGCTCGTCTTGGTTCTGATCTCATAGGCCGTGATTATAAACTACCTTTCAAATGTACTAGCAACATAAAAGAGGGAGAAATTGAAAAGATTAAGCATCACTTCCAAAGCAAGCAATCAAAGAATCCTTCTTTCTTTTACGCATTCCAGCTTGATGCTGATGATCAAATAACTAATATATTTTGGGCTGATACAAAGATGATGGTAGATTACACTGATTTTGGTGATGTTGTTTGTTTTGATAGCAGCTATAAATACTATAAGGACTCCCGGCCATTTGTTCCATTCCTTGGTATAAATAATCACCAGCAAATGACTATCTTTGGGGCTGCACTTCTTTATAGTGAATCTGTAGAATCTTTGAAGTGGCTGTTTGTAGTTTTCCTTGAGGCAATGTCTGGAAGAAAGCCAAAGACAATACTGACAGATCTAGATGTTGTAACAGCTGAAGCACTCAATGCCATACTACCCAAAACAAATCATCGAGTTTGTGTATGGCATGTCTATCAAGATGCCCTCAAGCATCTGAGTCATGTTTCTGCTGGATCTGATTCTTTTGTAAATGATTTAAGAAGCTGCCTTTTTCATCACGAGGAGGAGGACTATTTTGTTAATGAATGGAATGCTCTCCTGGACAAGTATAATCTGTGGGAAAATGAATGGTTACAACAAATATTTGGTAGCAGAGATCGATGGGCCATAGCATATCGAAGACAATTTTTTTGTGCTGACATAGAAAGCATGCTACTGAGAGAAAATCTTAGTGGCAACATGAAAAGGTACCTAAAGCACGACTCCGACATACTTCCCCTTTTCAAGTATCTTGTTAAAGTTGTTACTGATTGGCACTACAAGGAATTAGATGCCAATTTTGACATGAGCCAGCGTATGCCACCGCTGCTGGGTAATATCATTACGTTAAAGCATGCAAGTGCTCCATACACACCAAAGATATTTGAGCTATTTCAGAAAGAATATGAAGCATGTTTGAATCTAGTGATAAAGCATTGCACTGAAAATGGATCGTTGTATAATTATAAAGTTAGCGTATATGAACAGGCACGAGAGTATTCGGTCACATTTGATTCTTCTAATGAGACAATCAGTTGTAGCTGTATGAAATTTGAGTATGTGGGGATATTATGCTGCCATGCATTAAAAGTTCTCGACTATGTGAACATAAGGATTGTTCCATCTCGCTACATATTAAAGAGATGGACAAAAGATGCTAGAGTTTGA 2526 0.3888 MCVFCCLSCVAAALFSLTCFPCVYFEHRLMEGTEPDIERQPLEDAEKKCPISAEVVIDMGQESQTRNPSDSSVVDTIKVIDTGNECTDPNVCPVDCSHMEINDEGQTSNIFHDDKFHNDNVNSGQLCENPCATSVNVSMTSIDVKNEDEIYVAPKIGMEFESEDNAYKCYSMYAVQKGFSVRKDFVNKSRINGAVVSRRYTCHRQGYRPNKSGTFLRKFQQETRTGCLAHMTIACQPNGKFQVTHFETEHNHEFVTPCTAHMLPSQKRLSFAQAIEANLTVSGLDEVPKLGMGFDSDEHAYEFYNTYAGRVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDRRHMNVKRPRKDTRIGCLAQLVISRQPDGRYHVTHFEEKHNHELVAACRVHMLRSQKGLTATQIEKNLVDGSNVLPTSTSETNCKARLGSDLIGRDYKLPFKCTSNIKEGEIEKIKHHFQSKQSKNPSFFYAFQLDADDQITNIFWADTKMMVDYTDFGDVVCFDSSYKYYKDSRPFVPFLGINNHQQMTIFGAALLYSESVESLKWLFVVFLEAMSGRKPKTILTDLDVVTAEALNAILPKTNHRVCVWHVYQDALKHLSHVSAGSDSFVNDLRSCLFHHEEEDYFVNEWNALLDKYNLWENEWLQQIFGSRDRWAIAYRRQFFCADIESMLLRENLSGNMKRYLKHDSDILPLFKYLVKVVTDWHYKELDANFDMSQRMPPLLGNIITLKHASAPYTPKIFELFQKEYEACLNLVIKHCTENGSLYNYKVSVYEQAREYSVTFDSSNETISCSCMKFEYVGILCCHALKVLDYVNIRIVPSRYILKRWTKDARV 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01391 841 SMART 26again6 797 824 IPR006564 GO:0008270
Phco5g01391 841 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 145 272 IPR031052 GO:0006355
Phco5g01391 841 Pfam FAR1 DNA-binding domain 302 390 IPR004330 -
Phco5g01391 841 Pfam FAR1 DNA-binding domain 170 255 IPR004330 -
Phco5g01391 841 ProSiteProfiles Zinc finger SWIM-type profile. 786 822 IPR007527 GO:0008270
Phco5g01391 841 Pfam SWIM zinc finger 775 821 IPR007527 GO:0008270
Phco5g01391 841 Pfam MULE transposase domain 506 599 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01391 Phco-Chr5 49173056 49175581 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Phco5g01391 MULE 2.6e-20 CL0219