Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01354 ATGGATAACCGATTGTTTTCTACTCAGAATAAGAACTTTGAGGAGGGGTTGGCCAGTGGCGAGAAATTAAAACGTTCAAATTCTTGTCCCGTTCAAATAGGGACAAATGGGAAATCTTGCCACCAATGCCGGCAAAAGAAAGAGGATTTTGCTGCAACATGCAAGAACTTGAAGAAAGGGAAGCCTTGTCCGATTAAGTACTGCCACAAGTGCCTCTTGACTAGGTATGGGGAGAATGCTGAAGAAGTGGGACATTTGGCTGATTGGGAATGTCCGAAGTGTCGAGGCTTTTGCAACTGCAGCTTATGCCAGAAAAAACGAGGTGAGCAACCTACTGGTCCCCTGTATCGTAATGCCAAGGAATCTGGTTTTAAATCTGTTGCGGAAATGCTTGCGGTTAAGAAGGCTTCAGAAGCTTCCGGATTAAATAAGGTCAATGACACTGGTGAGCTTGAAGTACATCTCTCGGGGGAATCTGGGAAAGAAAATTGTACAAACACGAATGATGCCACTAAAGTTTGCAACAAAGAGTATGATGAAGGTGATAATGTTGATGCCGTGTTCCAAGGAGAGAGCAAAACAATTGAGGAAGAATTTCTTTTACCCCCTGGCATAGAGTTAAAAGAAATATTTGGCATTGAGTTACCACCCAAAGATGTTGGGAATGCGTTGCAACTTTTAGAGTTTTGCAAAGTGTTTGGAAAGGCTCTTGATATCAAGGAAGGAGAAGCTGAAGCCATGCTAGAAGAATTAGTATGTAAACAAAATATGCATGGACAAAATAGCTTGGTGAATGAATTTCATTTTAGAGTGCTAGCCTTGATACTAAACAATTCGGGAAATGAGTCTTCATCCTTACCTACTAGGGATGAAAGTAATTCATGGCTGAAATATCTGGAGGATTTAATTATAAAATCCTATCATATATTAAATGATTTTCCTTTGGATTGGTTTCAAGAAGGCATCAGTGGATATCATAATTTGGATTTGTCTAAAAAGCTTAAACTGATGACTTTTCTCTGTGACGAAGCTTTGAACACTGAGAAGCTAAGGAGTTATATTTATGAGGAAAATTCAAAGCATGTAAAAGAAGTGAAAGAAGCAAAACATAAGGTTGCTGCAACCAAGGAAAAGGTAAAGTTTCTTGAACAGAAGTTGCGGAGTGAGAAGGCCAAAGTTGTTCCTTCAACTGTGTCTCCCTTTTCGATGGAGGAGCATGAGGCTCTTCTTTCGAAAATAAAAATTGAGGTTGATGAAGCACAAACTGAGATGCTTGAGTTAAAATGCACAACTCAAAAAGCGAAGCTAGGTTGTGATGCTTTGAGGATCAAACCTGAATTTGTAGACAATAATGGTAAAACATTCTGGAATTTTAGAGGTTGCAGTAGTGAAGGTGCTGTTCTTTTGCAAGAAATTAAAATACAGGATGAAATTGCTAAAACACCGGAAGAAAACTGGTATGTTTATGGTTGTGACAAGAAGGAAGAGGTTGATAAATATATTTCCACAAGGGCTAAAAGACCTAACCGCCACAAGGTTTTGGTAGAAATCTTCGAGGGGAACACAGGATTTTTTCATGATTTTGTTGCGCTGAAGAAGTGGGACATTTGGCTGATTGGACATGTCCAAAGTGTCGAGGCTTTTGCAATTGTAACTTATGCCAAACGAGGAGAGCAACCTACTAGTCCCCTGTATCGTAATGCCAAGGAATCTAGTTTTAAATCTGTTGCGAAAATGCTTGTGGTTAAGAAGGCTTCAGAAGCTTCCGGATTAAATAAGGAGCTTGAAGTACATCTCTCGGGGGAATCTGGGAAAGAAAATTGTACAAACACGAATGATGTCACTAAAGTTTGCAACAAAGAGTATGATGAAGGTGATAATGTTGATGCCGTGTTCCAAGGAGAGAGCAAAACAATTGAGGAGGAAATTCTTTTACCCCCTGGCATAGAGTTAAAAGAAATATTTGGCATTGAGTTACCACCCAAAGATGTTGGGAATGCGTTGCAACTTTTAGAGTTTTGCAAAGTGTTTGGAAATGTATGGTTTCATGTTAACAATTTGTCTTGA 2067 0.3938 MDNRLFSTQNKNFEEGLASGEKLKRSNSCPVQIGTNGKSCHQCRQKKEDFAATCKNLKKGKPCPIKYCHKCLLTRYGENAEEVGHLADWECPKCRGFCNCSLCQKKRGEQPTGPLYRNAKESGFKSVAEMLAVKKASEASGLNKVNDTGELEVHLSGESGKENCTNTNDATKVCNKEYDEGDNVDAVFQGESKTIEEEFLLPPGIELKEIFGIELPPKDVGNALQLLEFCKVFGKALDIKEGEAEAMLEELVCKQNMHGQNSLVNEFHFRVLALILNNSGNESSSLPTRDESNSWLKYLEDLIIKSYHILNDFPLDWFQEGISGYHNLDLSKKLKLMTFLCDEALNTEKLRSYIYEENSKHVKEVKEAKHKVAATKEKVKFLEQKLRSEKAKVVPSTVSPFSMEEHEALLSKIKIEVDEAQTEMLELKCTTQKAKLGCDALRIKPEFVDNNGKTFWNFRGCSSEGAVLLQEIKIQDEIAKTPEENWYVYGCDKKEEVDKYISTRAKRPNRHKVLVEIFEGNTGFFHDFVALKKWDIWLIGHVQSVEAFAIVTYAKRGEQPTSPLYRNAKESSFKSVAKMLVVKKASEASGLNKELEVHLSGESGKENCTNTNDVTKVCNKEYDEGDNVDAVFQGESKTIEEEILLPPGIELKEIFGIELPPKDVGNALQLLEFCKVFGNVWFHVNNLS 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01354 688 PANTHER OS05G0300700 PROTEIN 34 425 IPR040221 GO:0006355
Phco5g01354 688 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 35 131 IPR018866 -
Phco5g01354 688 ProSiteProfiles DDT domain profile. 217 281 IPR018501 -
Phco5g01354 688 Coils Coil 365 392 - -
Phco5g01354 688 Pfam DDT domain 218 277 IPR018501 -
Phco5g01354 688 SMART testlast3 217 281 IPR018501 -
Phco5g01354 688 Coils Coil 403 430 - -
Phco5g01354 688 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 324 355 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01354 Phco-Chr5 48623666 48634746 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Phco5g01354 zf-4CXXC_R1 2.4e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01354 5 48623666 48634746 Phco5g01354 5 48623666 48634746 ECH