Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01352 ATGGCTATTACGGCAATCTCCAACTCCAATATTGAACCCGGGTTCTCCTCTGCTCAGCAGAAGAACATGAACCTGGTTGCTGCCGGTGGTAAGAAGCCCAAAAGGTGCAGTTCTCCCGGTGTTCGGATCGTGGGAAGTAGAATCTACGATTCTGCAAATGGGAAAACATGTCACCAGTGCCGGCAAAAAACAATGGATTTTGCTGCTTCTTGCAAGAATTCGAACAATGGGAAGCCCTGTCCCATTAAATTCTGTCAGAAATGCCTCATGAATAGGTATGGAGAAAATGCGGAAGAGGTAGATCGGTTGGACAATTGGGCTTGTCCAAAATGTAGAAACTTTTGCAACTGCAGCTTTTGCCGGAAGAAAAGAGGTGAACTTCCTACTGGTCAACTGTTTCATACAGCCAAGGCAACTGGGTTTAAATCTGTGTCTGAAATGCTTGTCGCAAAGACTTCTGAATATGAAGAGGAGCATAAACATGATCAAGTTTTAGCTAGCAAAGTTGCTTCATCCATGAAACCAATTGCATCAGAGAAGGAACTTGTAGTCTTTCTCTCGGGGGATATGGGGAAGGAAAACTCTTCTGAAAGAAACAGTAGTTTAAAGCTTGATCCTGTAAACACTCAGAAGACTTCAACCAAAATATCTAAGAAAGCAAAGCGTGAAGAATTAAAGGAAATATCTAATGGGAAAAATGGTGATAGCGCTGGCAAAAAGAAGAGCCACAAAAGGCGTAAAATTTGCGAAGAAGTTCCAAATGAGGGAAAAGAAAATGCAAATAACAGCACCAAAGCTTGTAACAAAGTCTCTGAAAAGGAAACAAAGGTAGATACTAAAAAATTGTTAGGAACTGATGCTGAAGGAAAATCTTTGTCTGGGGTACAAATACCAGAACATAGAAATCATCACCTTATTTCTGTGGGTCCTGCAAATGATTTCATTCTTCCAATGACTTCGGCCCCAAAGCAAGATATGCAGCATATGCACGCTGAAAATTGGAACAGTACTGTACCGATAGATAGTTGTGCTGGTGCCAAAGTCCAATTGGGAATAGCAAGGTTTGCAAGAGCTGATATGAACTTGGTGATAGATAAAACTGAAGAGGAAATTCCTTTGCCTCCTGCAGCTGAGTTAACGAAAATATTGGACATTGAGCTTCCACCTGAAAATGTTGGGGATGCATTGCAGCTCTTAGAGTTTTGCAGAGTATTTGGAAAGGCTCTTGATCTCAAAAAAGGAGAAGCCGAGGCCATGTTACGAGAATTGGTACGTAAACAAAATTTGCGTCGAGGACAAAACACTTTGGTGGTTCAATTTCAAATTAGAATGTTGACCCTAATACTTGCTGATTCAGAAAATGAGTCTCCATCCTTGACAATTAGCAAGGGAAGTAATTCATGGTTGAAAGCTATGAAGGATTTACTTGTTGAATCTGATCATATATTAAAGGATTTTCCTTTGAATTGGCTTGAAGAAGGCACCAATGGATATTACAATTTGGATTTGTCTATAAAGCTCACTTTGCTTAATTTTCTTTGTGATGAAGCTTTAGGCACTAGCAAATTGAGGAGTTGTATTGAAGATCAAAATTCAAGACATGCAGAAGATGTAAAAGAAGCAAAATCCAAGGTTGCTGAAGCTATGGATAAGGAGAAGGGTCTTAGGAAGAAGTTGAAGAATGAGATGGTTAAAACTATTATGTTGAAGGGGACTCCACTTCGAATGGAGAAGCGTAATACTCTACTTGCAAAGCTAAAAGGTGAAGTGGTTCAAGCTCATGATAAAGTGCTCAAGTTAAAGGGTGCACTTCCAAAAGAGAAACGTGATTCTCATGCTATAAGAATTAAGCCTGAATTTCTGGACAATGATGGTAAAATATTTTGGAAGCTCAAAAGTTACAATGACTGTAGTGTTCTTTTACAAGATATCAAGATACAAGATATAACTCTTATTGAAGAAAACTGGTTTGTTTATGGTCCTGAGAAGATAGAAGAAGTTGATAAATATATTTCCTCAAGGGCTAAAAGACTTAAAAGATATTTATGTTATTGGTGGAAATCTTTCTATGCTTGGCCGTTTTTGATTGAGGTTTGA 2097 0.3887 MAITAISNSNIEPGFSSAQQKNMNLVAAGGKKPKRCSSPGVRIVGSRIYDSANGKTCHQCRQKTMDFAASCKNSNNGKPCPIKFCQKCLMNRYGENAEEVDRLDNWACPKCRNFCNCSFCRKKRGELPTGQLFHTAKATGFKSVSEMLVAKTSEYEEEHKHDQVLASKVASSMKPIASEKELVVFLSGDMGKENSSERNSSLKLDPVNTQKTSTKISKKAKREELKEISNGKNGDSAGKKKSHKRRKICEEVPNEGKENANNSTKACNKVSEKETKVDTKKLLGTDAEGKSLSGVQIPEHRNHHLISVGPANDFILPMTSAPKQDMQHMHAENWNSTVPIDSCAGAKVQLGIARFARADMNLVIDKTEEEIPLPPAAELTKILDIELPPENVGDALQLLEFCRVFGKALDLKKGEAEAMLRELVRKQNLRRGQNTLVVQFQIRMLTLILADSENESPSLTISKGSNSWLKAMKDLLVESDHILKDFPLNWLEEGTNGYYNLDLSIKLTLLNFLCDEALGTSKLRSCIEDQNSRHAEDVKEAKSKVAEAMDKEKGLRKKLKNEMVKTIMLKGTPLRMEKRNTLLAKLKGEVVQAHDKVLKLKGALPKEKRDSHAIRIKPEFLDNDGKIFWKLKSYNDCSVLLQDIKIQDITLIEENWFVYGPEKIEEVDKYISSRAKRLKRYLCYWWKSFYAWPFLIEV 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01352 698 Coils Coil 531 558 - -
Phco5g01352 698 MobiDBLite consensus disorder prediction 191 277 - -
Phco5g01352 698 MobiDBLite consensus disorder prediction 216 237 - -
Phco5g01352 698 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 495 528 IPR028942 -
Phco5g01352 698 MobiDBLite consensus disorder prediction 192 214 - -
Phco5g01352 698 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 49 148 IPR018866 -
Phco5g01352 698 ProSiteProfiles DDT domain profile. 389 454 IPR018501 -
Phco5g01352 698 PANTHER OS05G0300700 PROTEIN 37 587 IPR040221 GO:0006355
Phco5g01352 698 SMART testlast3 389 454 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01352 Phco-Chr5 48606905 48612372 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Phco5g01352 zf-4CXXC_R1 4e-36 No_clan