Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01258 ATGTTCCCTTACAGTTCCAACCCCTACCCTTCTTTCCCTTCATCATCTTCTTCATTCCATCCTTTTCCATTCCTCAACCTTGAGAATGCTTCTGCAAGCAACGCCCTTCTTCATGATCCACTTTCTGTGCCTTACTTACCAACTCATCACAACCCTCCAAACATCCAAGAAGCACTGAGCAATTTGCCAGTCACAGATCACAACTGTGGTGGTGGAGGTTCTGCAATGACCAAACCTGACCCAAATGGTGGTGGTGGTGCTCCTCCCTATGGCCTTTCTTGCTTCCTCACTAAGAAGCCAGCTAAGAAAGACAGGCACAGCAAGATTTACACCTCTCAGGGTTTGAGGGACCGGAGGGTGAGGTTATCCATTGAGATTGCTCGCAAGTTCTTTGATCTTCAAGACATGCTAGGGTTTGACAAAGCCAGCAACACCCTTGAGTGGCTCTTCAACAAGTCCAAGAGAGCAATTAAGGAGCTGGCAAGGAGCAAGAACAGCACCAACAGTGAAGAAGGAGCCAAGAGCTTCTCTTCTTCATCTGAGTGTGATGATGACTGTGAAGTGATTTCCGAGATCAGGCAGAAACAACAACTCGTCACTGGTGATGCTGCTACTCCACACAACCTACAACATGGGTTAGATTCAAGCGATAATAAGTCACCGACATCGCTGGCTGCAAGGGAGAAGATGAAGTTGAAAAGGACACAGAAGGAACCTGCAAAGATGAAGGAATCAAGGGAGAAAGCAAGAGCAAGAGCAAGGGAAAGGACTAGTAACAAGATTATGTGCAATGTTAATTCCAACACAGGGAGGGTGCAACAAGACTTGAAGAAAAAGTACCCTGCAATTGAAAATAACCACTCTCAATTCATGCATCAATCAAGGTCACCCACACACCCTCACCACCTTGTGGGAAGTGAAGCACCTAGAGATGACTTCAACGTTATTGAGGAATCCATAGTGATCAAGAGAAAGTTGAAGCCATCATTGATGTCCTATTCTCATCACCATCACCAAAATCTTATGATCCCTAAGGAACCACCATGTTTCAACAACAACAGTGAGTACCACCCTTTCTCCAATTTATCTCCAAATTGGGATGCTAATGGATCCACTGGCCGCTCCAACTTCTGTGCCATAGCTAGCATGAATCCATCGACAGGGCTTCAAATCTTTGGAAAGTCTTGGGAGGAGTGCACCAATCCACGTTTACACTAG 1218 0.4581 MFPYSSNPYPSFPSSSSSFHPFPFLNLENASASNALLHDPLSVPYLPTHHNPPNIQEALSNLPVTDHNCGGGGSAMTKPDPNGGGGAPPYGLSCFLTKKPAKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSKNSTNSEEGAKSFSSSSECDDDCEVISEIRQKQQLVTGDAATPHNLQHGLDSSDNKSPTSLAAREKMKLKRTQKEPAKMKESREKARARARERTSNKIMCNVNSNTGRVQQDLKKKYPAIENNHSQFMHQSRSPTHPHHLVGSEAPRDDFNVIEESIVIKRKLKPSLMSYSHHHHQNLMIPKEPPCFNNNSEYHPFSNLSPNWDANGSTGRSNFCAIASMNPSTGLQIFGKSWEECTNPRLH 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01258 405 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 80 354 IPR005333 GO:0003700
Phco5g01258 405 ProSiteProfiles R domain profile. 243 260 IPR017888 -
Phco5g01258 405 ProSiteProfiles TCP domain profile. 102 160 IPR017887 -
Phco5g01258 405 MobiDBLite consensus disorder prediction 229 256 - -
Phco5g01258 405 MobiDBLite consensus disorder prediction 161 181 - -
Phco5g01258 405 Pfam TCP family transcription factor 101 261 IPR017887 -
Phco5g01258 405 MobiDBLite consensus disorder prediction 67 89 - -
Phco5g01258 405 MobiDBLite consensus disorder prediction 291 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01258 Phco-Chr5 46928918 46930248 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Phco5g01258 TCP 8.3e-46 No_clan