Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01252 ATGGGAAATAGGGTTCATCTTTCGGTGCTTCTGGTTTTGGTAACAGTTCTACTTTCAATCTTTCACTCGGAGCAACTGCAATCCTCTCACTCTCAGACCCTCCTAAGAATTCAACAGCTATTGAACTTTCCAACTGTTTTAAGCTGCTGGGACAACAACACAGACTTTTGCAGCACGGATTCAACATCTTCTCTCACTGTTGTTTGCTATGATGGCACCATAACCCAGCTGCACATAGTTGGTGAAACAAGAGCTCTACTTCTCCCTAAAAATTTCTCAATAAATTCCTTTTTCACAACACTGGTTAGGCTTCCCAGTCTGAAAGTCCTCACTTTGGTTTCTCTTGGCATATGGGGTCCATTGCCGGGTAAGATTGCTCATTTGTCATCACTGGAAATTTTCAATGCGAGTTCAAATTTCCTATATGGTTCCATCCCTTCAGAGTTCTCATCACTGTCACATCTCCAAACACTCATTCTAGACGACAACATGTTTTCTGGGCATTTTCCTGAATGGATTGATTCCTTTCCAGCGTTAACTGTGTTATGTGTGAAAAACAACTTGTTCAATGGTTCACTTCCGGATTCTCTGAGTAGTTTGGAGAATATGAGAATTCTTTCACTTTCTCATAACCACTTTTATGGACCAGTGCCTGATTTGCGCCGTTTGACAAATCTCCAAGTGCTGGAATTGGATGATAATGCTTTTGGACCCCGGTTTCCCCAGGTTGGTGACAAACTGGTTACTCTAGTACTAAGAAACAATAAGTTCAGGTCTAGCATCCCTGATGAAATGAGCTCATGTCAGCAACTTGAGACACTTGATATCTCAGCAAACACATTTGTTGGACCATTCCAACTACCACTAATGTCACTTCCTTCTATTACTTATCTGAACATTTCTGGGAACAAATTAACAGGAATGCTTTTGGAGAATCTGTCTTGCAATCCTGGACTTGAAGCAGTAGATTTATCCTCAAATCTTTTGACTGGGATCTTACCAAAATGTTTAATGTCAAATGCCAATGATAGGACTTTCTTGTATGCTAGAAATTGTCTAGAAGAGACAAATCAAAATCAGCATGCACTACCCTTTTGCCACACTGAAGCCATAGCTGTGGGAGTAGTACCTGAGGGAAAGAAGCACAAACGAGTATCTAAGGCAGTTCTCTCCCTTGGGATAGTTTGTGGTAGCTTTGGAGGAGTGGCAATTGTTGCACTGCTTTTTTTCATTATCAGAAGAGGAAATGTCCAAAGAAAAATCAAGAATCCTTCATCAAAATTAATATCAGAAAATGTTGCTTCAGGATACACCTCTAAGTTACACTCTGATGCAAGGTATATATCTCAAACAATGAAGTTTGGAACTGTCGATTTGCCTCCTTATCGAGCTTTCTCTCTGGATGAGATTGTAGCAGCTACAAACAACTTTGACTCGGCTTGTTTTATGGGTGAAGTTTCTCAGGGAAAGATGTACAGAGGTCAACTAAAGGGTGGTTTACTTGTTGCCATTAGAAGTATAAAAGTCACCAAAATCTACAGCACTCAAGATTTTATGCATAACATGGAGCAGATATTCAAATACAGGCATCGTCATTTAGTCAGTGTTCTTGGACATTGCTTTGAATGTTATTTGGATGATTCAAGTGTCAGCAGCATATTTATTGTCTTTGAGTATGTACCAAATGGCACACTCAAGAGCTGGATCTCAGATAGGCACTATAGAAAATTCCTAACGTGGACGCAACGCATAGAAGCTGCTATTGGAGTAGCAAAGGGCATCCAATATTTGCATACAGGAATTGTACCTGGTGTATATTCAAACAATCTCAAAATCACAGATGTTTTACTTGACAAAAATTTTGTTGCAAAAATCAAAAGTTATGACTCGCCTTTGTATTCTCCCATGAGGAAGGTTGGGCAAGGTAATCCTTCTAGAGAATTCAAAAGTCCTAGCGCTAACAAAAATGTAATACAGGAAGACAAGTCTGATGTATATGACTTTGGAGTAATCCTGCTGGAACTCATTCTAGGAAGGACAATAAAGTCAAGGAATGTGGACACTTTAAAAGATCTGTTGCAAGCAAGCATAACAGCTGATGGTGAAGCTAGGAGGAGCATCATAGATCCAGCAGTTCGCAAGGTGTGCTTAGATCAATCATTGAAGACAATGATGGAAATTTGTGTGAGGTGCCTAGTCAAAGAGCCAGCAGAGAGACCCTCTATTGAGGATGTTTTGTGGAATCTGCAGTTTGCAGCTCAAGTCCAAGATGCATGGATAGGAGACTCTCAAAGTGGTAGTGATGGCTCACCTATCTCACCTTTGGCATCTATAAGAATGACCTTCCATTAG 2352 0.4026 MGNRVHLSVLLVLVTVLLSIFHSEQLQSSHSQTLLRIQQLLNFPTVLSCWDNNTDFCSTDSTSSLTVVCYDGTITQLHIVGETRALLLPKNFSINSFFTTLVRLPSLKVLTLVSLGIWGPLPGKIAHLSSLEIFNASSNFLYGSIPSEFSSLSHLQTLILDDNMFSGHFPEWIDSFPALTVLCVKNNLFNGSLPDSLSSLENMRILSLSHNHFYGPVPDLRRLTNLQVLELDDNAFGPRFPQVGDKLVTLVLRNNKFRSSIPDEMSSCQQLETLDISANTFVGPFQLPLMSLPSITYLNISGNKLTGMLLENLSCNPGLEAVDLSSNLLTGILPKCLMSNANDRTFLYARNCLEETNQNQHALPFCHTEAIAVGVVPEGKKHKRVSKAVLSLGIVCGSFGGVAIVALLFFIIRRGNVQRKIKNPSSKLISENVASGYTSKLHSDARYISQTMKFGTVDLPPYRAFSLDEIVAATNNFDSACFMGEVSQGKMYRGQLKGGLLVAIRSIKVTKIYSTQDFMHNMEQIFKYRHRHLVSVLGHCFECYLDDSSVSSIFIVFEYVPNGTLKSWISDRHYRKFLTWTQRIEAAIGVAKGIQYLHTGIVPGVYSNNLKITDVLLDKNFVAKIKSYDSPLYSPMRKVGQGNPSREFKSPSANKNVIQEDKSDVYDFGVILLELILGRTIKSRNVDTLKDLLQASITADGEARRSIIDPAVRKVCLDQSLKTMMEICVRCLVKEPAERPSIEDVLWNLQFAAQVQDAWIGDSQSGSDGSPISPLASIRMTFH 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01252 783 SUPERFAMILY L domain-like 77 352 - -
Phco5g01252 783 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 450 559 - -
Phco5g01252 783 Gene3D Ribonuclease Inhibitor 27 241 IPR032675 -
Phco5g01252 783 SUPERFAMILY Protein kinase-like (PK-like) 457 751 IPR011009 -
Phco5g01252 783 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 560 765 - -
Phco5g01252 783 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 27 245 - -
Phco5g01252 783 Gene3D Transferase(Phosphotransferase) domain 1 560 764 - -
Phco5g01252 783 Pfam Protein tyrosine and serine/threonine kinase 483 746 IPR001245 GO:0004672|GO:0006468
Phco5g01252 783 ProSiteProfiles Protein kinase domain profile. 477 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01252 783 Gene3D Phosphorylase Kinase; domain 1 437 559 - -
Phco5g01252 783 Gene3D Ribonuclease Inhibitor 242 353 IPR032675 -
Phco5g01252 783 PANTHER UNNAMED PRODUCT 86 679 - -
Phco5g01252 783 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01252 Phco-Chr5 46823239 46839353 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Phco5g01252 PK_Tyr_Ser-Thr 2.3e-21 CL0016