Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01251 ATGCTAACAGCGGAAGAAAGTGTTCCCCCGAAGCGCTGCAACGTGAGAGAGCCTCCTCTGCTTCAATGCGCAGAGCTTGTGCTACCCTACCTTAACCCTTCAGAACTTGCCAACGTCTCCCTCACTTGCAAACCTCTCCTCAAGCTTTCACGCTCCATCACCTTACGCCGCGCCTCCGACGCTTCCAGAACCTTCGAGACCCTTCCGATTCCGTTCCTTAACGCAGTCGATTCCCACCCATACGCGCCCTTCTTCTACACGCGCTCCCTCGTCCTCTCCTCCCCACTCCCCCTCCTGCGCCAGCCCTGGGGCTCGTCGGCAGTTTCCCGCTCCGCGAAGTGTCGCCTTCTTCGCGCGGAGTCAGTGGGCTTCGTCGATGGCGCAGGCCGGGCCGTGTCGGGCTGCGAGTGCGAGGCATGTGCGGGTGCTGAGTGTCCTTGTGCTGGCCTGGATGGGCTGGATGACGTTGGCAGAGAGTGCGGGCCCGGGTGCCGGTGTGGACCCGAGTGCGGGAACCGGTTGACACGGAATGGGGTGGCGGTGAGGGTGAAGATTGTGAGGCATAGGACGAAAGGATGGGGGTTGCATGCGGATCAGTTAATCGCGAAAGGGGAGTTTGTTTTTGAATATGCAGGTGAACTCCTGACAACCAAGGAAGCCCAGAGGAGACATCAATACTATGATGAACTGGCTTCGCAGGGTCATTTTTCTTCAGCTCTTTTAGTTGTAAGGGAACATCTTCCTTCTGGAAAGGCATGTCTGAGATTGAATATCGACGCGACAAGATTAGGAAACGTTGCACGATTTGCAAATCATTCATGTGATGGTGGTAATTTAAGCACAAAGTTAGTTAGAAGTTCAGGAGCTTTGTTCCCTCGCTTATGCTTCTTTGCTTCTAAAGATATCCTAGTAGATGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGAAAAGGTCAAAGTGGTTGCCATGCTTTTGCAATAGCCCTTCTTGCGTTGGAACATTGCCCTCTGAAGACACTTGA 1023 0.5357 MLTAEESVPPKRCNVREPPLLQCAELVLPYLNPSELANVSLTCKPLLKLSRSITLRRASDASRTFETLPIPFLNAVDSHPYAPFFYTRSLVLSSPLPLLRQPWGSSAVSRSAKCRLLRAESVGFVDGAGRAVSGCECEACAGAECPCAGLDGLDDVGRECGPGCRCGPECGNRLTRNGVAVRVKIVRHRTKGWGLHADQLIAKGEFVFEYAGELLTTKEAQRRHQYYDELASQGHFSSALLVVREHLPSGKACLRLNIDATRLGNVARFANHSCDGGNLSTKLVRSSGALFPRLCFFASKDILVDEELTFSYGEIRKRSKWLPCFCNSPSCVGTLPSEDT 340
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01251 340 Pfam SET domain 192 313 IPR001214 GO:0005515
Phco5g01251 340 ProSiteProfiles SET domain profile. 181 313 IPR001214 GO:0005515
Phco5g01251 340 Gene3D SET domain 45 322 IPR046341 -
Phco5g01251 340 SMART set_7 181 319 IPR001214 GO:0005515
Phco5g01251 340 SUPERFAMILY SET domain 68 333 IPR046341 -
Phco5g01251 340 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 59 329 - -
Phco5g01251 340 ProSiteProfiles Post-SET domain profile. 320 336 IPR003616 -
Phco5g01251 340 SUPERFAMILY F-box domain 23 95 IPR036047 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phco5g01251 Phco-Chr5 46793021 46801577 Transposed
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco5g01251 SET 2.3e-16 No_clan