Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01222 ATGGAAAGGCTCCAAGGCTTTGTTGTGAAAGGGGGCATAAAACTACCAATTGGGTTCAGGTTTTGTCCCACGGATCAAGAGCTTCTCCTTCACTACCTCAAGAACAAGGCCTTTGCTCAACAATTACCTGCTTCAGTCATTTCAGACTGTGATGTCTTTCAGACTGACCCATGGTTGCTTCCAGGTGATTTGAGGGAAAAGAGGTACTTTTTTAGCGATTGTGGAAAAGTGAAGAAGAAAAGTGCTGGTTCGGGTTGTTGGAAATGTGTTGGAAAAGAAAAAGAAATAAGGCGTTGTGAAAGCAATGAGGTAATTGGGATGAAGAAAACACTGATGTTCTGCAAAGGTTCCAATGACACAAGAACTCGCTGGGTCATGCACCAATTACGTCTTCTAACTTCCTACCCATATCAGCAGATGGCAGTGGGAGATTTTGCAGTGTATGTCATATTTCAGAAAAGGAAGAAGACAAAAAGATCTGAGCAGAGAGTCTCTAGTAGCAGGAAAGTTGAGAGAGTAGATGATGTTAAAGCTAGTATGATGGATTTTAAAGTGGAATTTGGTGATGATAATATAGAGCTTCCCCCACCTTCTTCCCCATCTTTAAGTGAAGACTGTAGTGAAACAACTTAA 633 0.4139 MERLQGFVVKGGIKLPIGFRFCPTDQELLLHYLKNKAFAQQLPASVISDCDVFQTDPWLLPGDLREKRYFFSDCGKVKKKSAGSGCWKCVGKEKEIRRCESNEVIGMKKTLMFCKGSNDTRTRWVMHQLRLLTSYPYQQMAVGDFAVYVIFQKRKKTKRSEQRVSSSRKVERVDDVKASMMDFKVEFGDDNIELPPPSSPSLSEDCSETT 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01222 210 Pfam No apical meristem (NAM) protein 16 131 IPR003441 GO:0003677|GO:0006355
Phco5g01222 210 MobiDBLite consensus disorder prediction 196 210 - -
Phco5g01222 210 MobiDBLite consensus disorder prediction 187 210 - -
Phco5g01222 210 ProSiteProfiles NAC domain profile. 15 153 IPR003441 GO:0003677|GO:0006355
Phco5g01222 210 SUPERFAMILY NAC domain 10 153 IPR036093 GO:0003677|GO:0006355
Phco5g01222 210 Gene3D NAC domain 24 159 IPR036093 GO:0003677|GO:0006355
Phco5g01222 210 PANTHER NAC TRANSCRIPTION FACTOR 56 15 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01222 Phco-Chr5 46151215 46155006 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco5g01222 NAM 2.3e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01015 2 13763969 13765309 Phco5g01222 5 46151215 46155006 PCT