Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01211 ATGGAAGAACCAGTTGTGGTTAACAAAGGAGATGAGTCTTTGGATTTGCCTCCAGGTTTCAGGTTCCACCCCACAGATGAAGAGATCATCACTTGTTACCTCACAGAGAAAGTGCTGGATAGAGGCTTCAGTGCAACTGCTGTTGGGGAAGCTGATTTTAACAAGTGTGAGCCTTGGGACTTGCCCAAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTTTGCCAAAGGGATAGGAAGTATCCAACTGGCATGAGAACCAATAGAGCAACACAATCTGGTTATTGGAAGGCCACAGGCAAGGACAAAGAGATTTACAAAGGGAAGAACAATCTTGTGGGGATGAAGAAGACCCTTGTGTTTTATAGAGGAAGAGCTCCGAAGGGAGAGAAGACAAATTGGGTTATGCACGAATTCAGATTGGAAGGCAAATTCGCATGTTACAATCTTCCCAAGGCTGCAAAGGATGAATGGGTTGTGTGCAAGGTTTTCCATAAGAGCAACACTGATGTTAATAAAAGGGTACTCCCAATTAACCCTGGCATTGGCCTTCTTAGAATGAACTCAATTGGAGAAGATCTATTTGATTTCTCTTCACTTCCACCTCTCGTGGATCCTCTCTTTGACCAAACCTCACACAAGCACATTGACAATGATTTCAAGGGTACTACTAATAGTACTAACACACCTTCATCATCATCAGCTAAACCACCCTCAGGTGGCTATTACCTTCCCTATTTCATGAACAACAATCACCCCATGCAGATGATGATGAGGCCTGAAGAACACAGAATCTATGAGACTCCTGCCACCAACATTAACTATGCCTCCACCAGTCAAGGGAATTTCAACTCTAACAACCCAATGGGAATTGGCACAAGCAGTAACTCCCTTCAAAACTCAACCTCACCCTTCAACATGTTCCAGGATTATTGTATGCACCAAGGCAAAAACAGTTTCCAGCAGTTGAAGATGGAGCAATTCTCCAACACTAACCAGCCTGTGGTCAGTGCCTCTCAAGACACGTGCCTGAGCAATGACAGAAACACTGACACTTCCTCTGTGGTGTCAAAGCAAGACAACATGGGAAGGAACAAGGCATTGTACGAGGATCTTGATCAAGCTCCTTCATCAGTTGCTACCCTCTCAGATTTGGATTGCCTCTGGGATGATTACTGA 1182 0.4442 MEEPVVVNKGDESLDLPPGFRFHPTDEEIITCYLTEKVLDRGFSATAVGEADFNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDKEIYKGKNNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFACYNLPKAAKDEWVVCKVFHKSNTDVNKRVLPINPGIGLLRMNSIGEDLFDFSSLPPLVDPLFDQTSHKHIDNDFKGTTNSTNTPSSSSAKPPSGGYYLPYFMNNNHPMQMMMRPEEHRIYETPATNINYASTSQGNFNSNNPMGIGTSSNSLQNSTSPFNMFQDYCMHQGKNSFQQLKMEQFSNTNQPVVSASQDTCLSNDRNTDTSSVVSKQDNMGRNKALYEDLDQAPSSVATLSDLDCLWDDY 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01211 393 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Phco5g01211 393 MobiDBLite consensus disorder prediction 222 238 - -
Phco5g01211 393 FunFam NAC domain-containing protein 100-like 25 171 - -
Phco5g01211 393 MobiDBLite consensus disorder prediction 340 359 - -
Phco5g01211 393 SUPERFAMILY NAC domain 12 167 IPR036093 GO:0003677|GO:0006355
Phco5g01211 393 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Phco5g01211 393 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Phco5g01211 393 MobiDBLite consensus disorder prediction 216 238 - -
Phco5g01211 393 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01211 Phco-Chr5 45901269 45902940 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco5g01211 NAM 8.5e-39 No_clan