Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01205 ATGGGAACCCCACAATCCAACAACTTGCCACCAGGGTTTAGATTCCACCCTACAGATGAAGAGCTCATTCTTCACTACCTAAGGAAAAAGGTTGCCTCTATTCCTTTGGCAGTTTCCATCATTGCTGAGGTTGATATCTACAAGTGTGATCCATGGGAGTTACCAGCTAAGGCCGCGTTTGGGGAGAAAGAGTGGTACTTTTTTAGTCCTAGAGATCGGAAGTACCCAAATGGAGCGAGGCCAAACAGGGCAGCAGCTTCAGGGTATTGGAAGGCAACAGGCACTGATAAGAACATAGTGGCATCATTGGCAGGAGGAGTGAGAGAACATTTTGGTGTGAAGAAGGCTTTGGTTTTCTACAAAGGAAAACCCCCAAAGGGTGTGAAGACCAATTGGATCATGCATGAATATCGCCTTGTTGACACCAATAAACCTGTTAGGATCAAAGACACTTCCATGAGATTGGATGACTGGGTTCTGTGCCGGATATACAAAAAGTCCAAACACAGTCTATCTTCAATCACAGAGGCAGCACAAACAACTCTTGAGGAACAAATCAAAGACACCATTTCACCAATCTCCAACACTACAACAACTATTGTCCCTCCTCCACAAACCACACTCATATCTCAAAAATCTCTATCATTCTCTAACCTCTTGGATGCCACAGACTTTTCCATGCTTAGCACCATCTTATCTGAGAACCACTGCAACAATTACCCAAACACAACTGAACCTATGTTCAATTGTGAGAACCTGGATCATGAAACACCCCAAAACTACTACACCAACAACAATACTGTTAATAATATTCAGAAGAACCCTTCAGTGATTACTCACATGCCCAAACACCACCTTTCAAACATGGATGAGGACATCATGTACCCTTCAAAGCAACACCATAGTTCCTCTTGCAATTTTCCAAACACCACCCTCCAAAATCAGAACCCCCAATGGAACTTCATGTTCAAGCAGCCTCACATGAATCACCAGCTACTTCCGGGTCCTCTATATCTTCAGTTTCAGTGA 1029 0.4363 MGTPQSNNLPPGFRFHPTDEELILHYLRKKVASIPLAVSIIAEVDIYKCDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKNIVASLAGGVREHFGVKKALVFYKGKPPKGVKTNWIMHEYRLVDTNKPVRIKDTSMRLDDWVLCRIYKKSKHSLSSITEAAQTTLEEQIKDTISPISNTTTTIVPPPQTTLISQKSLSFSNLLDATDFSMLSTILSENHCNNYPNTTEPMFNCENLDHETPQNYYTNNNTVNNIQKNPSVITHMPKHHLSNMDEDIMYPSKQHHSSSCNFPNTTLQNQNPQWNFMFKQPHMNHQLLPGPLYLQFQ 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01205 342 SUPERFAMILY NAC domain 6 166 IPR036093 GO:0003677|GO:0006355
Phco5g01205 342 ProSiteProfiles NAC domain profile. 9 166 IPR003441 GO:0003677|GO:0006355
Phco5g01205 342 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 269 - -
Phco5g01205 342 Gene3D NAC domain 18 171 IPR036093 GO:0003677|GO:0006355
Phco5g01205 342 FunFam NAC transcription factor 56 18 171 - -
Phco5g01205 342 Pfam No apical meristem (NAM) protein 10 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01205 Phco-Chr5 45722563 45724646 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco5g01205 NAM 3.1e-40 No_clan