Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01199 ATGAAGAAAGTAGGAAGAATAACAGCTCTTTTCAAGAAGCTGCGAAATATATTGGATCAAATAATGTACTATCAGCAGCAGCAACAAGCTAGAAACATGCATGCTTTAAGGATGAACAGCCCCACTGAGAGGCATATGATTATGCAAGGAGGCAATGGGACTGGTGATTCAGGACTTGTTCTCTCAACTGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAACGGTTCATAGAAGCAGTCAATCAACTTGGAGGAGCAGACAAAGCTACACCAAAAACAGTTTTGAAACTGATGGGGATTCCTGGCCTTACTCTCTACCACTTAAAGAGTCATCTACAGAAGTACAGAATCAGTAAAAATATGCATGGACAAACCAATACTGGCAATAATAAAATTGAAGCAACAGGCAGAATGTCAGAAGCAAGTGGAATTCAAATGAAACATTTAAGCATAGGCCTACAGACAAACAAAAATTCAGAAATAAATGATGCGTTACAGATGCAAATTGAAGTCCAGAGAAGACTGCATGAGCAGCTTGAGCAGGTACAACGGCACTTGCAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAGGCAGTGTTGGAAAAGGCACAAGAAACACTAGGCAGACAAAATTTAGGTGCTGAGGGAGTTGAAGCTGCCAAAGTTCAATTATCTGAACTGGCATCAAGAGTATCCTCTCAAACTCTAGACACTAAATTTTCAGAACTGAAAGAATTACAGGTCCTGTGGCCTCAGCAAACACAAGAGGGCCAAGCCACTGACTGTTCAATGGGTAGTTTCTTGACCTATAGTGAGGAATCTCAAAGAAACAGAGAAACACATAACATGAGCCTGAATCTGATAGCCTACAATGGACCTCCATTTTCAGTTTCGAAAGGTTGTGTGGAAGAGTCAATGCATTTAAAGCCTGGTCTCACATTGAGTGAAGAAGTGAAGGAGAATATGATGTTTCTTTCCTCATCAAGTGATAGTAAAGTGGTGAAGGGAGATTTTTTACAAGAAAGGCCCTCAAGCCTCTTATCCATGAATGTTGGTGTTCTTGAAGAGGAAAAATTTGGGAAAACAACTCTTTCAAACGAAGAAGGCTGGAAGGTAAGAGACAGCACTGAAACGGAGAGAATGGCAGTTAAATTGAACCATGAGAAGATTTCTACAGACTATAGACTTGCAAACTTTGAAGTGAAACTAGATCTGAATTCCCATGATGATAATGATGCTTCTTCCCACTGCCAACAGTTTGATTTGAATGGTTTCAGCTGGAATTGCTAG 1302 0.4063 MKKVGRITALFKKLRNILDQIMYYQQQQQARNMHALRMNSPTERHMIMQGGNGTGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKNMHGQTNTGNNKIEATGRMSEASGIQMKHLSIGLQTNKNSEINDALQMQIEVQRRLHEQLEQVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGAEGVEAAKVQLSELASRVSSQTLDTKFSELKELQVLWPQQTQEGQATDCSMGSFLTYSEESQRNRETHNMSLNLIAYNGPPFSVSKGCVEESMHLKPGLTLSEEVKENMMFLSSSSDSKVVKGDFLQERPSSLLSMNVGVLEEEKFGKTTLSNEEGWKVRDSTETERMAVKLNHEKISTDYRLANFEVKLDLNSHDDNDASSHCQQFDLNGFSWNC 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01199 433 Pfam Myb-like DNA-binding domain 68 119 IPR001005 -
Phco5g01199 433 FunFam Myb family transcription factor 65 123 - -
Phco5g01199 433 SUPERFAMILY Homeodomain-like 65 121 IPR009057 -
Phco5g01199 433 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 123 IPR017930 -
Phco5g01199 433 NCBIfam myb-like DNA-binding domain, SHAQKYF class 66 121 IPR006447 GO:0003677
Phco5g01199 433 Gene3D - 65 123 - -
Phco5g01199 433 Coils Coil 165 185 - -
Phco5g01199 433 Pfam MYB-CC type transfactor, LHEQLE motif 163 210 IPR025756 -
Phco5g01199 433 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 37 292 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01199 Phco-Chr5 45576738 45579522 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco5g01199 Myb_DNA-binding 5.1e-09 CL0123