Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01194 ATGCCTTTATCTGCCGACAAAAACTCTGAGGACCATAAAGAGAGAGTGTTGAGTAGTGTGACATGTAACACCAAGCTCAAACTTAACTTTGTTTTTCTCCTTTTTCTTCTTCTTACTAATCTTCTCAGCTTCACTCTCTTGCTCATGGACATGGATGTTTGCCGAAATGTATCAGTTTCTAGTGAGCTTCCCACCCTTGATGACCTTTTCTCACATCAGAACATGGAAGTGGATTTTGGCATGGAATGGTTGTCTGTGTTTGTGGAAGACTGTTTTTCCAGTAAGCCAAGTTGCCTCTTGGCACCCACTGGTGTTCAAACCACAAGCACTAGCACCAAGCCTTCAAGCACAATGCAAAGACCCCAACAAAGTTACTGTCATTTGCAGAATTTTGTTGTGCCAGGGAAAGCCAGGAGCAAGAGGAAGAGGCTTTCAGCACCTAGGACAAAACACACTCTAAGCACCTGGTCGCATAATTTCAGCTCTGAAGTGTTGTGTTCTGACCCTCCTCTCTTGAAACAAGCCTATTGGTTGGCTGATAGTGAACTCATTGTCCCAAAGAAGAAGGATGAGCAAGAAGTGAAAGTGGAGATTGTGATGAGGAAGGAGAAATTGGGGGAGTGTTGTGATGAGGTTGAAGTTAACAATAGTAGTAATAATAATAATGGGCAGCACCCAATTCCCAGAAGGTGCACACATTGTCTGTCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTATGTAATGCATGTGGTGTGAGGTACAAGTCTGGAAGGTTGTTGCCAGAGTATAGGCCAGCCAAGAGCCCTACTTTTGTTAGCTATTTGCATTCCAATTCACACAAGAGAGTCATGGAGATGAGAATGAGTGTTCTATCTTCTGAGAAGTAG 906 0.4426 MPLSADKNSEDHKERVLSSVTCNTKLKLNFVFLLFLLLTNLLSFTLLLMDMDVCRNVSVSSELPTLDDLFSHQNMEVDFGMEWLSVFVEDCFSSKPSCLLAPTGVQTTSTSTKPSSTMQRPQQSYCHLQNFVVPGKARSKRKRLSAPRTKHTLSTWSHNFSSEVLCSDPPLLKQAYWLADSELIVPKKKDEQEVKVEIVMRKEKLGECCDEVEVNNSSNNNNGQHPIPRRCTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKRVMEMRMSVLSSEK 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01194 301 ProSitePatterns GATA-type zinc finger domain. 231 256 IPR000679 GO:0006355|GO:0043565
Phco5g01194 301 PANTHER GATA TRANSCRIPTION FACTOR 58 298 - -
Phco5g01194 301 CDD ZnF_GATA 230 277 IPR000679 GO:0006355|GO:0043565
Phco5g01194 301 ProSiteProfiles GATA-type zinc finger domain profile. 229 261 IPR000679 GO:0006355|GO:0043565
Phco5g01194 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 227 289 - -
Phco5g01194 301 SMART GATA_3 225 279 IPR000679 GO:0006355|GO:0043565
Phco5g01194 301 Pfam GATA zinc finger 231 265 IPR000679 GO:0006355|GO:0043565
Phco5g01194 301 Gene3D - 221 298 IPR013088 GO:0006355|GO:0008270
Phco5g01194 301 FunFam GATA transcription factor 219 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01194 Phco-Chr5 45469695 45471215 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco5g01194 GATA 2.1e-14 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01177 2 37616341 37617462 Phco5g01194 5 45469695 45471215 PCT