Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco5g01139 | ATGATCGGAAACTTCATCGACGACATTGACTGCGGCAGCTTCTTCGACCACATAGACGACCTCCTCGAATTCCCCGCCGAAGAAACAGCCGCCACTGACACCACTGCTGTCACACCGCTCGCTCCTCCGACAAACTTCTGGTCTGCCGAGTCTGACTCGTTCCACACCGCCAACACGGTGTTTTCCGACAATACTGTGCCGGACCTCTCCACGGAGCTCTCTGTTCCGTATGAAGACATTGTACAATTGGAATGGCTGTCAAATTTTGTTGAGGACTCTTTCTCTGGTGGAAGTCTCACCATGCAGCAAGAGCAGCCACAATGCACCAACAAGGAGGACATAACTCATGCCCAATTCCAGACAGCAAGTCCAGTCTCAGTCCTTGAAAGCAGTAGTTTCTGCTCTGGAGAGAAGGCTGTACCTCGTAGCCTGGAGATTTACATTCCTGTGCCATGTGGACGGGCACGCAGCAAGCGTGCACGTCCTACAGCCTTCAATCCCCAGCCAGTGATGCAGCTTATCTCGCCGGCATCTTCCACCGGCGAGAACACGCAGCACAACATCACCACCTCCAAGGCCTCCTCAGACACTGAGAATTTTGCCGAGTCCACTATCAAGACACCAAAGCAGGTCTTTGGTGAGCACAAGAAGAAAAAGAAGATCAAAGTGACTTTCTCTGCAGGTCAAGACCAGAATGGTGCACCATCACAGGCAGTGAGGAAATGTGTGCACTGTGAGATAACCAAGACACCGCAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCTTGTGGCGTGCGTTACAAGTCAGGGCGGCTCTTCCCTGAATACCGGCCAGCTGCCAGTCCAACGTTCTGCGCAGCTGTGCACTCCAACTCCCACAAGAAGGTCCTTGAAATGAGAAACAAGACAGACACCAAATCTGGTTTTGCAGCAGATTCAGCTGCCTCACCAGAACTTATTCCAAACACTAACAGCAGCCTTTCCCTGGAATACATGTGA | 1011 | 0.5223 | MIGNFIDDIDCGSFFDHIDDLLEFPAEETAATDTTAVTPLAPPTNFWSAESDSFHTANTVFSDNTVPDLSTELSVPYEDIVQLEWLSNFVEDSFSGGSLTMQQEQPQCTNKEDITHAQFQTASPVSVLESSSFCSGEKAVPRSLEIYIPVPCGRARSKRARPTAFNPQPVMQLISPASSTGENTQHNITTSKASSDTENFAESTIKTPKQVFGEHKKKKKIKVTFSAGQDQNGAPSQAVRKCVHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCAAVHSNSHKKVLEMRNKTDTKSGFAADSAASPELIPNTNSSLSLEYM | 336 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco5g01139 | 336 | PANTHER | GATA TRANSCRIPTION FACTOR | 15 | 319 | - | - | |
| Phco5g01139 | 336 | MobiDBLite | consensus disorder prediction | 176 | 201 | - | - | |
| Phco5g01139 | 336 | FunFam | GATA transcription factor | 231 | 317 | - | - | |
| Phco5g01139 | 336 | CDD | ZnF_GATA | 241 | 288 | IPR000679 | GO:0006355|GO:0043565 | |
| Phco5g01139 | 336 | ProSitePatterns | GATA-type zinc finger domain. | 242 | 267 | IPR000679 | GO:0006355|GO:0043565 | |
| Phco5g01139 | 336 | Gene3D | - | 236 | 286 | IPR013088 | GO:0006355|GO:0008270 | |
| Phco5g01139 | 336 | ProSiteProfiles | GATA-type zinc finger domain profile. | 236 | 272 | IPR000679 | GO:0006355|GO:0043565 | |
| Phco5g01139 | 336 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 240 | 299 | - | - | |
| Phco5g01139 | 336 | SMART | GATA_3 | 236 | 286 | IPR000679 | GO:0006355|GO:0043565 | |
| Phco5g01139 | 336 | Pfam | GATA zinc finger | 242 | 275 | IPR000679 | GO:0006355|GO:0043565 | |
| Phco5g01139 | 336 | PIRSF | Txn_fac_GATA_plant | 2 | 330 | IPR016679 | GO:0003677|GO:0005634|GO:0045893 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco5g01139 | Phco-Chr5 | 44239181 | 44242088 | Dispersed/Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2C2-GATA | Phco5g01139 | GATA | 1.1e-15 | CL0167 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco5g01139 | 5 | 44239181 | 44242088 | Phco6g02191 | 6 | 43008403 | 43011661 | PCT |