Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01129 ATGGGCAGGTATGACTACCCTTCAACATCTTTCCTTACTGTTGTTTTCTTCCTCTTTTGTTTCTGTCCCATGGTGTTCTCCCTGCTACCACAAAACCAAACAGAAACCATGAACAATCTCTCTAAGAATCTTCCTCCCACTATTCCCTGGAGTGGCTCAGACCCATGTGCATGGAAGGGAGTGAGTTGTGACCCTGCCAACTCCTCTGTAGTAGGGATTTCTTTATCTGGTTTTTCACTCCCTTCTTCTGACTTTCTGCCTCTTGTTTGCCAAATTGAAACTTTAGAGCATCTTGATGTCTCCAAAAACCGTCTGAGCTCAATCCCTGATGGTTTCATCACTGAGTGCGGAAAGATAAAGGGGTTGAAGCTGTTGAATTTCAGTGTTAACAAGTTAGGAGGTGTTTTACCTACTTTTCATGGCTTTGATGCATTGGAATCCCTGGATATGTCTTTCAATGTGATGGGAGGGAATATTGGTTTGGAGATAGATGGGTTGGTTAGCCTCAAAAGTTTGAATCTTACTTTCAATGGATTCAATGGGTCTCTTCCTACCAAATTGGGAAAGCCCTTGGTTTTGGAGCACCTTCTGCTTTCTAACAATACCTTTGATGGCAAAATCCCTGACGAATTATTGAGTTATGAAAACTTGACTTGGATTGATCTTAAGAACAATAAACTTTCACAGTCTATTCCTATTAATATTGGGAAGCTTTCTAAATTGGAAACTTTGATCCTTTCCACTAATAGCCTCACTGGTGAAATTCCAACTTCACTAGTGAACATCACCAAACTTTCAAGATTTGCAGCAAGTGAGAACAGGTTCACAGGTTCTATACCTTCTGGGATCACAAAATATCTCACGAGTTTGGATCTTAGTTATAATAATCTGTCTGGAGCCATTCCGGAAGACCTTTTATCTCCACCACAGTTGCAGGTTGTAGATTTGTCCAGTAATACGATAAATGGGTCTTTACCTAGGAAAGTTTCTCCAAAATTGTTCAGGTTGAGGCTTGGGAGCAATCAGCTGAGCGGAAACATTCCTTCAGATGCTTTTGTAGGAGTTCATAATTTGACATACTTGGAGCTGGATAACAATATCTTAACGGGATCGATACCAGCTGAATTGGGTTCTTGCAGGAGTTTGGCATTGTTGAATTTAGCTCAGAATCGGTTGAGTGGTGTATTGCCACAACAGCTTGGTAATCTTACCAATCTCCAGGGGTTGCTGCTCCAATTTAACAATCTTAATGGTACTATCCCAACTCAAATTGGACAACTTCCTAGGTTGTTAACCCTGAATTTAAGCCGGAATTCTCTGAGTGGATCGATTCCATCTGAGATTACAAATTTAGGCGAGCTTAATTTCCTGTACTTGCAAGGCAACAATCTTAGTGGTTCCATACCGATATCCATTGCCAACTTGAGCCGTCTTTTAGTACTCCAACTTGGGGAAAACCACCTAAGAGGTGTGATTCCAAACATGCCATTGAATCTGCTGGTTTCATTGAATCTTAGTAGCAACCTCTTTAGTGGTCCTATTCCTAGTTTTTATGGTTTGAATAGCCTGGAAGTCTTGGATCTCTCAAATAACAGCTTTTCTGGTCACATTCCTGATTATCTTATTAGCATGCCGTCTTTGACTCGGTTGATACTTTCTAACAATCCTCTTCTGTCTGGTGAAATCCCAAAATTCAGTAGCAATGTTAATGTTGAATATTTTGGAACTGGTCTAAAAAATAATACTGAACAGCACAACCGAAATTCCAACACCGAGTCCAAGAAGAATGGAATATCCCTTGCAGTATCCATTCTCATTGCAATTGTAGCAGCTATTTTTCTTGTTGGCCTAGTCACTCTGTTGGTTGTGTCAGCGTCACACCTTTATTACAGGGTTAGTGACGAGCATTCACAGTCAAGAGAAGATCGTCAGCATCCTCAGGTCATGCAAAGTAATTTGTTAACTCCTAATGGAATGCATAGATCAAATATTGACTTCTCCAAAGCCATGGAAGCTGTTGCTGAAACATCAAATGTTACTCTTAAAACAAGATTTTCAACTTATTATATGGCTGTCATGCCGTCTGGATCAACCTATTATGTCAAGAAACTGAACTGGGTTGACAAGATATTCCAAGTGGGAAGTCATGATAATTTTGTTAAAGAGCTAGAAGTATTAGCAAAATTGAACAATTCCAATGTCATGACTCCTTTGGCCTATGTTCTGTCCACTGACACTGCTTATATACTATACGAGTATATCTCAAATGGTTCCCTCTTTGATGTTCTTCATGGAAGTATGGATTTGTCTTTAGATTGGGCTAGCAGATACAGTATAGCTGTTGGAGTGGCTCAAGGACTTTCTTTTCTTCATGGATTCGCCTCTAGTCCAATACTACTCCTTGACCTGTCAAGTAAAAGTATTATGCTCAAGTCCCTCAAGGAGCCTCTAGTTGGGGATATTGAACACTACAAGGTCATTGATCCCTCAAAGAGTACGGGGAACTTTTCTGCAGTTGCTGGTTCAGTTGGCTATATTCCTCCAGAGTATGCATACACAATGACAGTAACAATGGCTGGGAATGTATACAGCTTTGGTGTGATTCTGCTTGAACTGCTGACAGGAAAACCTGCAGTAACTGAGGGAACGGAATTGGTCAAGTGGGTTTTGCGTAACTCCACAAACCAAGATTACATTCTTGACTTTAATGTCAGTAGAACATCACAAGCAGTCAGAAACCAGATGCTTGCAATTCTTGAGATTGCTCGTGTTTGTGTTAGTACATCCCCAGAATCAAGACCAAAGATGAAGAGTGTGCTGAGGATGCTCTTAAATGCTAGATGA 2844 0.4054 MGRYDYPSTSFLTVVFFLFCFCPMVFSLLPQNQTETMNNLSKNLPPTIPWSGSDPCAWKGVSCDPANSSVVGISLSGFSLPSSDFLPLVCQIETLEHLDVSKNRLSSIPDGFITECGKIKGLKLLNFSVNKLGGVLPTFHGFDALESLDMSFNVMGGNIGLEIDGLVSLKSLNLTFNGFNGSLPTKLGKPLVLEHLLLSNNTFDGKIPDELLSYENLTWIDLKNNKLSQSIPINIGKLSKLETLILSTNSLTGEIPTSLVNITKLSRFAASENRFTGSIPSGITKYLTSLDLSYNNLSGAIPEDLLSPPQLQVVDLSSNTINGSLPRKVSPKLFRLRLGSNQLSGNIPSDAFVGVHNLTYLELDNNILTGSIPAELGSCRSLALLNLAQNRLSGVLPQQLGNLTNLQGLLLQFNNLNGTIPTQIGQLPRLLTLNLSRNSLSGSIPSEITNLGELNFLYLQGNNLSGSIPISIANLSRLLVLQLGENHLRGVIPNMPLNLLVSLNLSSNLFSGPIPSFYGLNSLEVLDLSNNSFSGHIPDYLISMPSLTRLILSNNPLLSGEIPKFSSNVNVEYFGTGLKNNTEQHNRNSNTESKKNGISLAVSILIAIVAAIFLVGLVTLLVVSASHLYYRVSDEHSQSREDRQHPQVMQSNLLTPNGMHRSNIDFSKAMEAVAETSNVTLKTRFSTYYMAVMPSGSTYYVKKLNWVDKIFQVGSHDNFVKELEVLAKLNNSNVMTPLAYVLSTDTAYILYEYISNGSLFDVLHGSMDLSLDWASRYSIAVGVAQGLSFLHGFASSPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSKSTGNFSAVAGSVGYIPPEYAYTMTVTMAGNVYSFGVILLELLTGKPAVTEGTELVKWVLRNSTNQDYILDFNVSRTSQAVRNQMLAILEIARVCVSTSPESRPKMKSVLRMLLNAR 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01129 947 Gene3D Ribonuclease Inhibitor 32 188 IPR032675 -
Phco5g01129 947 ProSiteProfiles Protein kinase domain profile. 674 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01129 947 SUPERFAMILY RNI-like 254 559 - -
Phco5g01129 947 Gene3D Transferase(Phosphotransferase) domain 1 754 947 - -
Phco5g01129 947 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 235 943 - -
Phco5g01129 947 ProSiteProfiles Leucine-rich repeat profile. 94 115 IPR001611 GO:0005515
Phco5g01129 947 FunFam Leucine-rich repeat receptor-like protein kinase TDR 287 585 - -
Phco5g01129 947 Gene3D Ribonuclease Inhibitor 189 284 IPR032675 -
Phco5g01129 947 PRINTS Leucine-rich repeat signature 520 533 - -
Phco5g01129 947 PRINTS Leucine-rich repeat signature 287 300 - -
Phco5g01129 947 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 642 753 - -
Phco5g01129 947 Gene3D Phosphorylase Kinase; domain 1 635 753 - -
Phco5g01129 947 FunFam leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 754 947 - -
Phco5g01129 947 FunFam Leucine-rich repeat receptor protein kinase EMS1 207 286 - -
Phco5g01129 947 Gene3D Ribonuclease Inhibitor 285 580 IPR032675 -
Phco5g01129 947 Pfam Protein kinase domain 686 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01129 947 SUPERFAMILY L domain-like 39 326 - -
Phco5g01129 947 SMART LRR_typ_2 92 115 IPR003591 -
Phco5g01129 947 SMART LRR_typ_2 520 544 IPR003591 -
Phco5g01129 947 SMART LRR_typ_2 427 451 IPR003591 -
Phco5g01129 947 SMART LRR_typ_2 403 426 IPR003591 -
Phco5g01129 947 SMART LRR_typ_2 238 262 IPR003591 -
Phco5g01129 947 SMART LRR_typ_2 331 354 IPR003591 -
Phco5g01129 947 SMART LRR_typ_2 475 498 IPR003591 -
Phco5g01129 947 SMART LRR_typ_2 287 308 IPR003591 -
Phco5g01129 947 SMART LRR_typ_2 355 379 IPR003591 -
Phco5g01129 947 SMART LRR_typ_2 166 190 IPR003591 -
Phco5g01129 947 Pfam Leucine rich repeat 516 557 IPR001611 GO:0005515
Phco5g01129 947 Pfam Leucine rich repeat 331 392 IPR001611 GO:0005515
Phco5g01129 947 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Phco5g01129 947 Pfam Leucine rich repeat 405 464 IPR001611 GO:0005515
Phco5g01129 947 SUPERFAMILY Protein kinase-like (PK-like) 685 943 IPR011009 -
Phco5g01129 947 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 31 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01129 Phco-Chr5 44034356 44037856 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco5g01129 Pkinase 5.2e-23 CL0016