Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01126 ATGGATACAAATGGGAGTCTACGCGCCAACACCTGGGCGAGGTCGTCGTCTTTAACCTCGGATCCCCTGTCATTCCCAGGTTTTGGTTTGCAGAATAATCAACCCAAATGGGATGACCCGTCAAATTCAGATTATGGGATCAGGGAAGAAGTACCTTTCAAAGAATTCAACCAGCCTTCTCAAACTCAGTCTCCACTTCCTTGCAACTCAAACAATGAGATTGAGATCCCTAATCAAGAAAAGTGTCATCTGAATGAATCTTCACAAACCAGTACACTCCAAGATTGGGACCCCAATGTGATGTTGAATAACCTGTCTTTCCTGGAAGAAAAGATTCATCAGCTCCAGGATCTAGTGCATTTGATTGTTCATCAGAAAGGAGTTGGACAACCTAATGAACTTGTAACTCAGGAACAGCAGCTCATCACAACTGATCTTACATCAATCATTATTCAATTGATCTCTACTGCAGGTAGTCTTCTCCCATCTGTCAGGCACAACCTTGCAAATGCAGCTTCATTGTTTGGACAAATTGACCAGATTCGTGGGACAACCGTTCCTTCTGGGACTGGTGGAAGTAGCAGCTGTATTCAGCCACAAAATAATGGTGCAAAAAAAATGTCTGATCAGTCCATGCAAACTGATCTACCTAATAATTGTGAAATGGAGCCAAACTACAATATGGCAGAACAAGAACTCAAAGATGAAGAAGATGTAGATGATGGAGAAAACCTTGCCCCTGGTTCATATGAGATTCTACAATTAGAGAAGGAAGAAATCCTTGCCCCTCATACCCATTTCTGTACAATTTGTGGGAAGGGGTTCAAGAGAGATGCAAATCTCCGAATGCACATGCGTGGTCATGGTGACGAGTACAAAACCCCAGCAGCTCTTGCAAAACCGCACAAAGATTCCGGGTCACCAAAGCTCATCAAGAGGTATTCCTGTCCCTATCCTGGCTGCAAGCGCAACAAGGATCACAAGAAGTTTCAACCTCTGAAGACTATCCTATGTGTCAAAAACCATTACAAAAGGACACATTGTGACAAGAGTTACACTTGCAGCAGATGCAACACCAAGAAGTTCTCAGTCATGGCTGATCTGAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTCTGTTCATGTGGCACAACATTTTCTAGGAAAGACAAGCTTTTTGGGCACATTGCTCTTTTCCAGGGCCATACTCCAGCCATTCCCTTGGATGACAATAAAGGGGTAGCTGAGCCACGCAATCATGACAGCAAAGAAAACAGTAAGGTGGGGAATATGAACTTCACTTTTGGATCAAGTCCTTCAAACGGAAATGAAGTTGAAAATGTGATGGATGTAAAATGCAATAATAGTGATGATCCTATTAGTTTTTTCTCATCATTGAACTTTGACACCAGCTTTGGTGGGTTTAATGAATTCACTAGACCTCTATTTGATGACTCAGAAGGCTCATTCTCTTTTGTCATGCCCGGATCTTTCAAATCTGGAGGAGAATCGAGTGCTGACAATCTTTTGTAA 1539 0.4243 MDTNGSLRANTWARSSSLTSDPLSFPGFGLQNNQPKWDDPSNSDYGIREEVPFKEFNQPSQTQSPLPCNSNNEIEIPNQEKCHLNESSQTSTLQDWDPNVMLNNLSFLEEKIHQLQDLVHLIVHQKGVGQPNELVTQEQQLITTDLTSIIIQLISTAGSLLPSVRHNLANAASLFGQIDQIRGTTVPSGTGGSSSCIQPQNNGAKKMSDQSMQTDLPNNCEMEPNYNMAEQELKDEEDVDDGENLAPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKDSGSPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDNKGVAEPRNHDSKENSKVGNMNFTFGSSPSNGNEVENVMDVKCNNSDDPISFFSSLNFDTSFGGFNEFTRPLFDDSEGSFSFVMPGSFKSGGESSADNLL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01126 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 293 IPR013087 -
Phco5g01126 512 MobiDBLite consensus disorder prediction 185 212 - -
Phco5g01126 512 ProSitePatterns Zinc finger C2H2 type domain signature. 268 288 IPR013087 -
Phco5g01126 512 MobiDBLite consensus disorder prediction 1 43 - -
Phco5g01126 512 SUPERFAMILY beta-beta-alpha zinc fingers 264 291 IPR036236 -
Phco5g01126 512 MobiDBLite consensus disorder prediction 411 433 - -
Phco5g01126 512 Gene3D Classic Zinc Finger 250 316 - -
Phco5g01126 512 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 80 487 IPR044300 GO:0010044|GO:0010447
Phco5g01126 512 SMART c2h2final6 352 374 IPR013087 -
Phco5g01126 512 SMART c2h2final6 314 347 IPR013087 -
Phco5g01126 512 SMART c2h2final6 266 288 IPR013087 -
Phco5g01126 512 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01126 Phco-Chr5 43988238 43989776 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco5g01126 None None None