Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01110 ATGGAAGATTCAGAGGGAGAAGAGCTTCTAAATCTTACTCTTTCGGTTGCTGCAGGTCGGGAGAGGAAAAAGAAAGGAAGGACAAGGGATGATAATACTAATTCTCTTGTTATTCCTATGAAGTCCCGTGAAGGGTATGAAGGGAAGATCTTTAGGCTCCTCCAAATGAGGGAGCTAATGCTAAGAGAAGATCACAGAAGAAAAGGAGTGGTTGAAGACGTGAATAATGGCCTTCCTTTGATTCATTTGCTTCTTTCAACTGCCACTTCAATTGATGAGAGAAACTACTGTTCAACTCTAGAAAATCTCATTGAGTTGTACCAAACAGTTTCCCTAATAGGTGATTCAGTTCAACGAGTGGTTGCTTATTTTGCTGATGGTTTGGCTGCAAGGCTTCTCACAAGAAAGTCCCCTTTCTATGACATGGTCATGGAGGAACCAACAAGTGAGGAAGAGTTTCTTGCATTCACAGATCTCTATAGAGTCTCACCCTATTACCAATTTGCTCACTTCACAGCAAACCAGGCTATTTTGGAGGCCTATGAGGAGGAGGAAGAGAGGAACAACAAATCACTTCATGTCATTGATTTTGATGTCTCCTATGGCTTCCAATGGCCTTCTCTTATTCAATCACTTTCTGAAAAGGCAACCAGTGGCAACAGAATATCCCTCAGGATAACAGGTTTTGGGAACAACCTTAAAGAACTGCAAGAAACTGAGGCCAGGTTAGTTAGTTTCTCAAAGGGGTTTAGTAACCACCTAGTGTTTGAATTCCAAGGGCTGCTAAGAGGCTCATCAAGGCTCATCAACCTAAGGAAAAAGAAAAATGAAACTTTGGCAGTGAACCTTGTTTCTTACTTGAACACTTTGACTAGTTTCATGAAGGTCTCGGACACATTAGAACTTGTTCATTCTCTTAGCCCCTCCATTGTGGTGTTGGTGAAACAAGAAGGTAGCAGGAATTTGAAGACCTTCTTGTCAAGGTTCACTGAGTCTTTGCACTATTTTGCAGCCATGTTCGATTCACTAGATGATTGCTTGCCACTTGAGAGCACTGAGAGATTGAGGATTGAGAAGAAGCTTTTGGGGAAAGAGATCAAAAGCATGCTCAACTATGACATGGATGGTGTGGATTGCCCAAAGTATGAGAGGATGGAAACATGGAAAACAAGAATGGAGAATCATGAATTTGTGGGAAGAAAAATTAGCTCAAAGTGTGTGATCCAAGCAAAGCTGCTTCTGAAGATGAGGACCCATTATTATCCCCTACAGTTTGAGGAAGAGGGTGGAAGTGGGGGTTTCAGAGTTTCTGAAAGGGATGAAGGAAGAGTTATCTCTTTGGGATGGCAAAATAGGTTTCTTCTCACAGTCTCAGCATGGCAACCAATTTGA 1392 0.4195 MEDSEGEELLNLTLSVAAGRERKKKGRTRDDNTNSLVIPMKSREGYEGKIFRLLQMRELMLREDHRRKGVVEDVNNGLPLIHLLLSTATSIDERNYCSTLENLIELYQTVSLIGDSVQRVVAYFADGLAARLLTRKSPFYDMVMEEPTSEEEFLAFTDLYRVSPYYQFAHFTANQAILEAYEEEEERNNKSLHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGNNLKELQETEARLVSFSKGFSNHLVFEFQGLLRGSSRLINLRKKKNETLAVNLVSYLNTLTSFMKVSDTLELVHSLSPSIVVLVKQEGSRNLKTFLSRFTESLHYFAAMFDSLDDCLPLESTERLRIEKKLLGKEIKSMLNYDMDGVDCPKYERMETWKTRMENHEFVGRKISSKCVIQAKLLLKMRTHYYPLQFEEEGGSGGFRVSERDEGRVISLGWQNRFLLTVSAWQPI 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01110 463 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 77 456 IPR005202 -
Phco5g01110 463 ProSiteProfiles GRAS family profile. 71 461 IPR005202 -
Phco5g01110 463 Pfam GRAS domain family 80 461 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01110 Phco-Chr5 42520820 42522211 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco5g01110 GRAS 1e-87 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01110 5 42520820 42522211 Phco5g01110 5 42520820 42522211 ECH
Phco5g01110 5 42520820 42522211 Phco6g02243 6 43612622 43614007 PCT