Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g01089 ATGGAGAGAGAGTTGTGGGGTTTTGTTTTCTTCTGGTGGGTGTTCTTAGTTCACCCATTGTGCTTGGTTTCTGCTAACATGGAAGGTGACGCCTTACATAACCTGAGGACAAATTTACAGGATCCTAACAATGTTTTGCAAAGTTGGGACCCTACATTGGTGAATCCATGCACGTGGTTTCATGTAACATGCAACAACGACAATAGTGTCATTAGAGTTGATCTGGGAAATGCTGCTTTGTCTGGTCAACTTGTTCCACAGCTTGGCCAGCTCAAAAACTTACAGTATTTGGAACTTTACAGCAATAACATTAGTGGACCAATCCCAAGTGACCTGGGGAATCTTACTAATTTGGTGAGCTTGGATTTGTATCTAAACTACTTCAGTGGACCTATCCCAGAGTCATTGGGCAAGTTGTCAAAATTGCGTTTCCTCCGGCTTAACAACAACAGCCTGACTGGTCCAATTCCCATGTCACTGACTAATGTCACTGCTCTGCAAGTGCTGGATTTGTCTAATAACCGTCTCTCAGGTGTGGTTCCTGATAATGGATCCTTCTCACTATTCACTCCCATCAGCTTTACCAACAACTTGGATCTATGTGGCCCAGTCACTGGGCACCCTTGTCCTGGGTCACCTCCATTTTCTCCTCCTCCTCCTTTTGTCCCACCATCCCCAATCTCTGCTCCAGGAGGAAATAGTGCCACTGGTGCAATAGCTGGAGGAGTAGCTGCAGGTGCTGCTCTGTTATTTGCTGCTCCTGCAATTGCGTTTGCATGGTGGCGTCGAAGGAAACCACAAGAATTTTTCTTTGATGTACCTGCTGAAGAAGATCCTGAAGTACATCTTGGGCAGCTTAAGAGGTTCTCACTACGGGAACTGCAAGTTGCAACAGATACTTTTAGTAATAAGAACATTCTTGGAAGGGGTGGATTTGGTAAAGTGTACAAAGGACGCTTGGCAGATGGTTCACTGGTTGCTGTGAAAAGATTGAAAGAGGAGCGCACACCTGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTGCACCGAAATCTCCTCCGTTTACGTGGGTTCTGTATGACACCAACTGAAAGACTACTTGTATATCCTTACATGGCTAATGGAAGTGTTGCCTCATGCTTAAGAGAGCGACCGGCACATCAACAACCCCTTGATTGGCCCACAAGAAAAAGAATAGCATTGGGATCATCAAGGGGACTTTCATATTTGCATGATCATTGTGACCCAAAGATTATCCATCGTGATGTAAAAGCTGCAAACATATTGTTGGATGAGGAGTTTGAGGCTGTTGTTGGGGATTTTGGGTTGGCTAAACTGATGGACTACAAGGACACCCATGTTACAACTGCTGTACGAGGCACAATTGGGCACATAGCCCCAGAGTACCTATCTACTGGTAAATCTTCAGAGAAAACTGACGTATTTGGGTATGGTATAATGCTTCTGGAACTGATCACTGGACAAAGGGCTTTTGACTTAGCTCGTCTAGCAAATGATGATGATGTTATGTTGCTGGATTGGGTTAAAGGACTCTTGAAGGAAAAGAAGCTAGAAATGCTTGTTGACCCTGATCTCCATAGCAATTACATAGATGATGAGGTAGAACAGTTAATTCAGGTTGCACTGCTTTGCACACAAGGTTTCCCTATGGATCGGCCTAAGATGTCGGAAGTGGTGCGAATGCTTGAAGGTGACGGTTTGGCAGAAAGATGGGACGAGTGGCAAAAGGTGGAGGTTCTGCGCCAGGAAGTTGAGCTCGCCCCTCATCCCAGTTCTGATTGGATTGTTGACTCAACTGAAAATCTACATGCAGTTGAGTTATCTGGTCCAAGGTAA 1875 0.4523 MERELWGFVFFWWVFLVHPLCLVSANMEGDALHNLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQYLELYSNNISGPIPSDLGNLTNLVSLDLYLNYFSGPIPESLGKLSKLRFLRLNNNSLTGPIPMSLTNVTALQVLDLSNNRLSGVVPDNGSFSLFTPISFTNNLDLCGPVTGHPCPGSPPFSPPPPFVPPSPISAPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPAHQQPLDWPTRKRIALGSSRGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLHSNYIDDEVEQLIQVALLCTQGFPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHPSSDWIVDSTENLHAVELSGPR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g01089 624 FunFam Somatic embryogenesis receptor-like kinase 1 378 595 - -
Phco5g01089 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Phco5g01089 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 586 - -
Phco5g01089 624 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Phco5g01089 624 SUPERFAMILY Protein kinase-like (PK-like) 280 576 IPR011009 -
Phco5g01089 624 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Phco5g01089 624 Gene3D Transferase(Phosphotransferase) domain 1 378 595 - -
Phco5g01089 624 SMART serkin_6 301 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01089 624 ProSiteProfiles Protein kinase domain profile. 301 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01089 624 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Phco5g01089 624 FunFam Somatic embryogenesis receptor kinase 1 270 377 - -
Phco5g01089 624 FunFam Somatic embryogenesis receptor kinase 1 24 211 - -
Phco5g01089 624 SUPERFAMILY L domain-like 28 192 - -
Phco5g01089 624 Pfam Protein kinase domain 302 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g01089 624 Gene3D Ribonuclease Inhibitor 24 211 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g01089 Phco-Chr5 40525863 40533195 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Phco5g01089 Pkinase 4.4e-44 CL0016