Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00995 ATGCTTTGGTTCATAACAGTTGAAGCAAAGATGAGGATTATGATAAAGGGCGGTGTTTGGAAAAACACCGAAGATGAAATCCTGAAAGCTGCTGTTATGAAATATGGAAAGAACCAGTGGGCTCGAATCTCTTCGCTCCTTGTTCGCAAATCTGCCAAGCAATGCAAAGCTCGCTGGTATGAGTGGCTTGATCCCTCCATAAAAAAGACTGAGTGGACGAGAGAAGAGGACGAGAAGTTACTTCATCTTGCTAAGCTCATGCCCACTCAGTGGAGAACAATTGCTCCAATTGTAGGTCGTACACCTTCCCAGTGTCTTGAGCGGTATGAGAAGCTCCTTGATGCAGCCTGTGTAAAAGATGAGAACTATGAGCCTGGTGATGATCCTCGAAAATTGCGTCCTGGGGAGATTGATCCAAACCCTGAGTCAAAACCTGCACGGCCTGATCCTGTTGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGCACGAGCCCGGTTAGCCAACACAAAGGGAAAGAAAGCAAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCGAGGAGGCTTGCTTCCTTACAAAAGAAGAGAGAATTGAAGGCAGCTGGAATTGATATCAGGCAGCGGAAGAGAAAAAGGAAAGGAATAGACTACAATGCAGAAATTCCATTTGAGAAAAGGCCTCCTCCAGGGTTTTTTGATGTTGCAGATGAAGATAGACCAGTGGAACAGCCAAAGTTTCCTACTACAATTGAAGAACTTGAAGGGAAAAGGAGGGTTGATGTGGAGGCACAATTAAGAAAGCAGGACATTGCAAAAAATAAAATTGCACAAAGGCAAGATGCCCCGTCTGCCATATTGCATGCCAACAAATTGAATGATCCAGAAACAGTAAGAAAGAGGTCAAAATTGATGCTTCCACCACCCCAGATATCTGATCAGGAATTGGATGAAATTGCGAAGTTGGGTTATGCTAGTGACCTTGCAGGGAGTCAGGAACTTGCTGAAGGTAGTGGTGCTACACGTGCTCTTTTGGCTAATTATGCACAGACACCTGGACGAGGAGTGACTCCTTTGCGAACCCCTCAGAGAACACCAGCTGGTAAAGGAGATGCTATTATGATGGAAGCTGAAAATCTTGCCAGGTTGAGGGAGTCTCAAACACCATTGTTGGGAGGGGAGAATCCGGAGTTGCATCCTTCAGATTTTTCTGGTGTCACTCCTAAGAAAAAGGACATTCAGACTCCAAATCCAATGCTGACTCCTTCTGCAACTCCTGGAGGCCTCACTCCAAGAATTGGTATGACGCCAACAAGAGATGGTTTTTCTTTTAGCATGACACCAAAGGGAACTCCTCTGAGGGATGAGCTACATATTAATGAGGACATGAATATGCATGACAGTACTAAACGTGAGCTGCAGAGACAGGCTGATATAAGAAGAAGTCTGCGTGCTGGTTTAGGAAGCCTTCCACAGCCCACGAATGAGTACCAAATAGTGATGGAACCAGTTACAGAAGATGCTGAAGAGCCTGAGGAGAAGATTGAAGAGGATATGTCTGACAGAATAGCTAGAGAAAAAGCGGAAGAAGAGGCAAGACAGCAGGCACTACTTAGAAAACGATCAAAGGTCCTTCAACGGGAACTTCCTAGGCCCCCTGCTGCGTCATTGGAGCTTATAAGAAATTCCTTGATGAGAACTGATGGGGACAAGAGTTCCTTTGTTCCACCAACCTCTATTGAGCAAGCTGATGAGATGATTAGAAAGGAGCTTTTAACTTTACTGGAGCATGACAATGCTAAGTATCCACTTGATAATAAAGTGAATAAGGAGAAAAAGAAAGGAGTCAAGCGTTCGGCAGACGTGTCTGCAGTCCCTGTGATAGAAGATTTTGAGGAAGATGAAATGAAAGATGCTGATAAGTTGATAAAGGAAGAAGTCCAGTATCTTTGTGCAGCAATGGGACATGAAAATGAGCCCCTTGATGAATTTATTGAAGCACATCGAACCTGCCTCAATGATCTTACGTACTTTCCTACCCGTAATGCATATGGTCTCTCCAGTGTTGCTGGGAACATGGAAAAGCTAGCAGCTTTGCAGAATGAATTTGAGATTGCGAGAAACAAGTTGGATGATGATAAGGAGAAGATGGTACGGCTTGAGAAGAAGGTGATTGTCATCACACAAGGCTACGAGATGAGAGCAAAGAAAAGTATCTGGCCGCAAATTGAGGCCACTTTCAAGCAGATGGATATAGCTGCAACCGAGTTAGAATGCTTTAAAGCTTTGCACAAGCAGGAGCAATTAGCGGCATCCCTCAGGATAAACAATTTGTGGAGTGAAGTACAGAAGCAAAAGGAACTTGAAAAAACTTTGCAAAACAGGTACGGGAGTCTAGTTGAAGAGCTGGAGAAGATGCAAAATACCATGAACCAATGCAGATTAAAAGCACAGCAGCTAAAAGAAATTGAAGCAAACAATGCTCATGCTGAGGCCAATGAGACCAAGGCCGATGAAACTGATGTGCAGGATACAGAGACTCATAAAGTTGTACCTCACTCAGTAGAGGATGGAAATGCTCTAGCTGTAACAGTTGAGTCATCACATGATGCAACTGCTGACCAGCAAGTAGAGATTGTGCAAGACGAGTCTACTTCTAGCCCCAGTCATGACATGAATGTGGATCCTGATAAAATGCATACAATACATGACACTGATGTTAAATTAGCAAATGCTTCACCAGCTGCTGAGAATGTTGTTGAAATAGTGGAAGGTACTAGTCCTACTGATGGTAATACTGACAATGGGGAGAACGTGTCAGAAATGGGTGCTTCAATGGAAATAAATAGCCGCAATCATGATGTAGTTGCGAGTGCTGTTATGGAGGAGACAAATTAG 2901 0.4388 MLWFITVEAKMRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRKRKRKGIDYNAEIPFEKRPPPGFFDVADEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLAGSQELAEGSGATRALLANYAQTPGRGVTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKDIQTPNPMLTPSATPGGLTPRIGMTPTRDGFSFSMTPKGTPLRDELHINEDMNMHDSTKRELQRQADIRRSLRAGLGSLPQPTNEYQIVMEPVTEDAEEPEEKIEEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPAASLELIRNSLMRTDGDKSSFVPPTSIEQADEMIRKELLTLLEHDNAKYPLDNKVNKEKKKGVKRSADVSAVPVIEDFEEDEMKDADKLIKEEVQYLCAAMGHENEPLDEFIEAHRTCLNDLTYFPTRNAYGLSSVAGNMEKLAALQNEFEIARNKLDDDKEKMVRLEKKVIVITQGYEMRAKKSIWPQIEATFKQMDIAATELECFKALHKQEQLAASLRINNLWSEVQKQKELEKTLQNRYGSLVEELEKMQNTMNQCRLKAQQLKEIEANNAHAEANETKADETDVQDTETHKVVPHSVEDGNALAVTVESSHDATADQQVEIVQDESTSSPSHDMNVDPDKMHTIHDTDVKLANASPAAENVVEIVEGTSPTDGNTDNGENVSEMGASMEINSRNHDVVASAVMEETN 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00995 966 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 117 IPR017930 -
Phco5g00995 966 MobiDBLite consensus disorder prediction 390 433 - -
Phco5g00995 966 Pfam Myb-like DNA-binding domain 20 80 - -
Phco5g00995 966 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 67 IPR017930 -
Phco5g00995 966 CDD SANT 20 63 IPR001005 -
Phco5g00995 966 FunFam CDC5 cell division cycle 5-like 15 69 - -
Phco5g00995 966 Pfam pre-mRNA splicing factor component 416 662 IPR021786 -
Phco5g00995 966 Coils Coil 790 841 - -
Phco5g00995 966 MobiDBLite consensus disorder prediction 123 160 - -
Phco5g00995 966 Gene3D - 15 69 - -
Phco5g00995 966 SMART sant 68 115 IPR001005 -
Phco5g00995 966 SMART sant 16 65 IPR001005 -
Phco5g00995 966 MobiDBLite consensus disorder prediction 409 425 - -
Phco5g00995 966 ProSiteProfiles Myb-like domain profile. 12 63 IPR001005 -
Phco5g00995 966 CDD SANT_CDC5_II 65 116 IPR047240 -
Phco5g00995 966 Gene3D - 70 124 - -
Phco5g00995 966 Coils Coil 697 724 - -
Phco5g00995 966 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 11 811 IPR047242 GO:0000398|GO:0000974
Phco5g00995 966 SUPERFAMILY Homeodomain-like 43 116 IPR009057 -
Phco5g00995 966 FunFam CDC5 cell division cycle 5-like 70 130 - -
Phco5g00995 966 Coils Coil 177 197 - -
Phco5g00995 966 ProSiteProfiles Myb-like domain profile. 64 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00995 Phco-Chr5 21479947 21486534 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco5g00995 Myb_Cef 2.5e-62 No_clan