Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00944 ATGGAAGGGAATTTGTCTCAGGGAGGTATGGTTCAAGGTGGGAGTTCTTTTGGTGGTTTTGATTTGCCTGGATCAATGAGGGTTCATCGGCAAGGGCATCATCCTCATTCCATGAATCAACATCAAACTCATCCTTGCCAAGGGCCTTCAGTGCATTCCTCAGTTCAAGATGGTTTTCCTCTTACAATGGGAACCTTGCAGAACTGCGATCAGACAATGTCAATGACTGAGTTTAGTCAGGGAGATAGAAACAAGAACTCACCAAGTGATGAAAGTTTTGCTGAGGAAGGTGTTGATGGTCATCATGAAGGAGGTAGAGGGAAAAAGGGGTCGCCTTGGCAGCGGGTGAAGTGGACTGATAAGATGGTGAGGCTTCTGATAACGGCTGTTTCTTACATAGGTGAGGATGCAACATCTGACTGTGGTGGCTCAAGGAGAAAATTTACAGTCCTACAGAAAAAGGGGAAGTGGAAATCGGTTTCCAAGGTCATGGCTGAAAGAGGTCATCGTGTTTCACCTCAGCAGTGTGAGGATAAATTCAATGATCTTAATAAAAGGTACAAAAAGCTTAATGATATGCTAGGCCGGGGAACTTCTTGTCGGGTTGTTGAGAATCCTTCTCTATTGGATGTGATAAATTATCTTTCTGAGAAAGAAAAAGAGGAGGTTCGAAAAATATTGAGCTCAAAACACTTGTTTTATGAAGAGATGTGTTCTTACCATAATTGCAACAGGTTGCATTTACCCCATGATCTGGAATTGCAACGATCACTGCAGTTGGCTCATAGAAATAGAGATGATCATGACAATGATGATATCAGAAGGTCTCATCATGATGATCACGATGAAGATGATCTAGAAGTGGAAACTGATGATCATGATGACTTTGAGGAGAATTATGCTACCCATGCAGATAGTAGAGGAGTCTATGGGGAAGCGGGGCGACCTATGAAGAGATTGAAACCAGGGCAAGGACAAGAAGATGCTGCTACTTTTGGCTGTGCTTTAAACAGCCAAGAGTACAACAAAAGTTCAAATCCTTATATGGTTCAATCTGATGTTAATCAAGCTGCACCTGAAAAAATGAGTGCAGCATGGTTACAGAAGCAATGGTTTGAATCTCGTTCACTTCAGTTAGAAGAGCAGAAGCTACAAATTCAGGTTGAGATGTTGGAGCTGGAGAAACAAAGATTCAAGTGGCAGAAGTTTAGTAAGAAAAAAGACCGGGAGTTGGAAAAGTTGAAGCTGGAGAATGAAAGAATGAAGCTTGAGAATGAACGTATTGCTTTAGAACTAAAACGAAAGGGAGTGGGTGCTGACTTTAACTAG 1329 0.4199 MEGNLSQGGMVQGGSSFGGFDLPGSMRVHRQGHHPHSMNQHQTHPCQGPSVHSSVQDGFPLTMGTLQNCDQTMSMTEFSQGDRNKNSPSDESFAEEGVDGHHEGGRGKKGSPWQRVKWTDKMVRLLITAVSYIGEDATSDCGGSRRKFTVLQKKGKWKSVSKVMAERGHRVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCRVVENPSLLDVINYLSEKEKEEVRKILSSKHLFYEEMCSYHNCNRLHLPHDLELQRSLQLAHRNRDDHDNDDIRRSHHDDHDEDDLEVETDDHDDFEENYATHADSRGVYGEAGRPMKRLKPGQGQEDAATFGCALNSQEYNKSSNPYMVQSDVNQAAPEKMSAAWLQKQWFESRSLQLEEQKLQIQVEMLELEKQRFKWQKFSKKKDRELEKLKLENERMKLENERIALELKRKGVGADFN 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00944 442 Coils Coil 374 396 - -
Phco5g00944 442 Coils Coil 404 433 - -
Phco5g00944 442 MobiDBLite consensus disorder prediction 77 113 - -
Phco5g00944 442 MobiDBLite consensus disorder prediction 1 54 - -
Phco5g00944 442 Pfam Myb/SANT-like DNA-binding domain 115 240 IPR044822 -
Phco5g00944 442 PANTHER F16F4.11 PROTEIN-RELATED 1 441 - -
Phco5g00944 442 MobiDBLite consensus disorder prediction 263 290 - -
Phco5g00944 442 Gene3D - 118 189 - -
Phco5g00944 442 MobiDBLite consensus disorder prediction 38 54 - -
Phco5g00944 442 MobiDBLite consensus disorder prediction 88 113 - -
Phco5g00944 442 MobiDBLite consensus disorder prediction 263 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00944 Phco-Chr5 14246591 14247919 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Phco5g00944 Myb_DNA-bind_4 6e-23 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00944 5 14246591 14247919 Phco5g00944 5 14246591 14247919 ECH
Phco5g00944 5 14246591 14247919 Phco6g02379 6 45043256 45044602 PCT