Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00770 ATGGTATCCAAAAACCCGAACCCGCCGGAGGGATTCTACTTGGATCCGACTGGCATGGCTCTCCCAGGGATGCCTCCCTTAGCCTCCGTCTCTGCCGCCGCCGCCGCTGTCTCCGCCTCCAACTCCTCGGAAGACGCAGCCAAGAAGATCCGCAAGCCCTACACTATCACCAAGTCGCGGGAGAACTGGACCGAACCCGAACACGACAAGTTCCTCGAAGCCCTTCAACTGTTTGATCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACTGTTATACAGATACGTAGTCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGTGGAGCAAGTGAACATCTTCCGCCACCCAGGCCTAAAAGAAAAGCAGCACATCCATATCCTCAAAAAGCTTCCAAAAATGCTCCTGTACTCCCACAAGTATCAGGATCTTTCCAATCTTCATCTGTGGTTGAACCTGGATATATCCTGAAGAATGATTCCCCAGCAATGGTTAAAATTCCTATGAACACTGTGGTGTCGTCCTGGTCAAACAACACCTTGCAAACTGTCAATTTATCCCCTGTGACAAAAGTGAATAATCCTTGCAGTAGTGGTGAAAGCACTCCTAAAGTGCGCCCTTCTGGTGAATCTAATTGTCAAGGACCTCATCTAGGGAATAAAATCCATCCATTGAGAGTTCTTCCAGATTTTACTCAGGTATATGGATTCATTGGCAGTGTATTTGATCCAAATGCAACTGAGCATCTGCAGAAACTAAAAAAGATGGACCGTATAGACGTTGAGACAGTGCTACTGCTAATGAGAAACCTGTCTATCAATTTAACTAGCCCAGATTTTGAGGATCATAGGAAGTTGCTTTCATCATATGAGATTGAACCTGAGAGAAATAACTACCAATGTGGATAG 918 0.4521 MVSKNPNPPEGFYLDPTGMALPGMPPLASVSAAAAAVSASNSSEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGASEHLPPPRPKRKAAHPYPQKASKNAPVLPQVSGSFQSSSVVEPGYILKNDSPAMVKIPMNTVVSSWSNNTLQTVNLSPVTKVNNPCSSGESTPKVRPSGESNCQGPHLGNKIHPLRVLPDFTQVYGFIGSVFDPNATEHLQKLKKMDRIDVETVLLLMRNLSINLTSPDFEDHRKLLSSYEIEPERNNYQCG 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00770 305 MobiDBLite consensus disorder prediction 111 143 - -
Phco5g00770 305 PANTHER SWI/SNF COMPLEX-RELATED 34 279 - -
Phco5g00770 305 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Phco5g00770 305 Gene3D - 62 110 - -
Phco5g00770 305 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Phco5g00770 305 SUPERFAMILY Homeodomain-like 54 110 IPR009057 -
Phco5g00770 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Phco5g00770 305 MobiDBLite consensus disorder prediction 195 215 - -
Phco5g00770 305 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Phco5g00770 305 Pfam Myb-like DNA-binding domain 60 105 IPR001005 -
Phco5g00770 305 SMART sant 59 107 IPR001005 -
Phco5g00770 305 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Phco5g00770 305 CDD SANT 62 105 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00770 Phco-Chr5 8802001 8809814 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco5g00770 Myb_DNA-binding 3.9e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00770 5 8802001 8809814 Phco6g02437 6 45804677 45808976 ECH
Phco5g00770 5 8802001 8809814 Phco5g00770 5 8802001 8809814 ECH
Phco5g00770 5 8802001 8809814 Phco6g02437 6 45804677 45808976 PCT