Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00740 ATGTCATCGCCAGGGTTCACTGGCGGAGGTGGGGCGTCCGATTACTTCGCTGGAGCGGGTGGTTTCACCGGCAGATCCATTCCGGCAGCCACCATGAACAACCCCAACGCGGCTGTAACTGCCACCACAAACCTCCACCCTCTCTACCGAACCCAGCAACAGAATCTCCCTGCAATGTTTCTAGATCCTGCCTCTCAGCAGATCGCTCAACGACAAACACCAACCTTCATCGGTAAACGCACCCTCACCGAATTCCAAACCTATAACCAAACCTACAACCAACCCAACACCAACCCCAACCATGTCCTCTCCAACCTCTTGCTTCGTTCCGTTAAACCGCGAACCAGTTTCTCTCAGAGTTCCATGGATAGTTTTCCCGAATTGCATAACCAAAACCCTTCCGTTTACCAACAGCAGCGTTTTGGTGTTCCTTTACTTCATCAGCTCCGTCCCCAGCCCATTAACCTACCCAGCAATGGGTCTGGGCCCATGCCAAGCCCAAATTTCGGCTACCGGAACTCGAATTTGGGCATGCCACAGAACCGGGTTCGTCTTTCTGTTCCTCTCCCGCTTCCGGTTCAGGTGGCTGAGCCAGAGAAGAAGTTCATGGATCATCGGCTTCTGGAATTGGAGAAGCAGCTTCTTGAAGACAACGATGAAGGAGAAGAAGCCGATGCTGCCTCTGTGATAACCACTAGCGAGTGGTCTGAAACTTATCAGAATTTGATCAGTTCCGGTCCGGTTCAGAAACTGGTGTCCACGTCACCGACTTCATCAACCACATCATCTACGTCATCTTCTTCCTCCATCGCTTCACCTGCTTCTGGATGCTCCAAGCAAACGCTCATGGAAGCCGCATCTGCAATCGTTGAAGGAAAATATGACATGGCGATGGAGATCCTGAACCGCTTGAACGGTCCAAATTCAAACAGGACTGATAGATTAACCGATTGCATGGTCTTGGCGTTGAAGTCTAGGATGAATCCGGGGGAATATCCACCTCCAGTGGCGGAGCTTTTCGGCTATGAACATGCCGAGTCGACTCAGTTGATTCTGGAAAACTCCATGTGCTTTAAGGTAGGGTTAATGGCTGCGAATCTTGCGATTTTGGAAGCTGCATTTGAGGAGAAAACGGAATACAGGTTCTGCGTGTTGGATTTTGAGATTGGACAGGGAAAGCAGTATCCGCACCTCTTCAACGCGCTCTCTGCACGTGGACAGAACGTCACACTTAAGATAGTGGCGGTAGCAGAGAACGGAGGAGAAGACAGAGTGCGTGCTGTCGGAGACATGCTGAGTCATCTGGCAGAGAGGAAGAGGATCGGGTTCGAGTTTAGACTGATAACAACTCCTAAACTCACTGAGTTGACTCGTGAGTCGCTGGGATGCAATGAGGACGAAGTTCTCATGGTGAACTTTGCGTTCAAGCTTAACAAAATCCCAGATGAGAGTGTGTCTATCGAGAACCAACGTGATGAGCTTCTCCGGCGCGTGAAGGGACTCGCGCCGCGCGTGGTGACAGTAGTTGAGCAGGAGATGAACGCAAACACAGCGCCCTTTCTGGCTCGTGTGGCAGAAACGCTGTCGTTCTATGGTGTGTTGTTGGAGTCCATTGAAGCCATGAATAGCAATATCAGCATCAATAACTCTGACCGAGTCAGACTCGAAGAAGGACTGAACCGAAAGTTACACAACACAGTAGCATGCGAAGGCAGAGACCGTGTAGAACGTTGTGAAGTGTTTGGGAAATGGCGTGCGCGAATGAGCATGGCAGGGTTCGAGTTAAAGCCACTGAGTCAGAACATGGCCGAGTCAATAAAATCACGACTCACCGCCACCAACAACCGAGTCAACTCGGGACTGACGGTGAAGGAAGAGAACGGTGGAATTTGCTCTGGTTGGATGGGTAAAACACTCACAGTTGCATCTGTTTGGCGTTAA 1941 0.507 MSSPGFTGGGGASDYFAGAGGFTGRSIPAATMNNPNAAVTATTNLHPLYRTQQQNLPAMFLDPASQQIAQRQTPTFIGKRTLTEFQTYNQTYNQPNTNPNHVLSNLLLRSVKPRTSFSQSSMDSFPELHNQNPSVYQQQRFGVPLLHQLRPQPINLPSNGSGPMPSPNFGYRNSNLGMPQNRVRLSVPLPLPVQVAEPEKKFMDHRLLELEKQLLEDNDEGEEADAASVITTSEWSETYQNLISSGPVQKLVSTSPTSSTTSSTSSSSSIASPASGCSKQTLMEAASAIVEGKYDMAMEILNRLNGPNSNRTDRLTDCMVLALKSRMNPGEYPPPVAELFGYEHAESTQLILENSMCFKVGLMAANLAILEAAFEEKTEYRFCVLDFEIGQGKQYPHLFNALSARGQNVTLKIVAVAENGGEDRVRAVGDMLSHLAERKRIGFEFRLITTPKLTELTRESLGCNEDEVLMVNFAFKLNKIPDESVSIENQRDELLRRVKGLAPRVVTVVEQEMNANTAPFLARVAETLSFYGVLLESIEAMNSNISINNSDRVRLEEGLNRKLHNTVACEGRDRVERCEVFGKWRARMSMAGFELKPLSQNMAESIKSRLTATNNRVNSGLTVKEENGGICSGWMGKTLTVASVWR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00740 646 MobiDBLite consensus disorder prediction 249 275 - -
Phco5g00740 646 ProSiteProfiles GRAS family profile. 269 646 IPR005202 -
Phco5g00740 646 Pfam GRAS domain family 279 646 IPR005202 -
Phco5g00740 646 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 251 634 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00740 Phco-Chr5 8279136 8281076 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco5g00740 GRAS 2.6e-83 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00740 5 8279136 8281076 Phco5g00740 5 8279136 8281076 ECH
Phco5g00740 5 8279136 8281076 Phco6g02447 6 45882992 45884791 PCT