Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00649 ATGGCTCAGCCGCCACCGGTGGAACACAACGCCGACTCCACCACCACCGCCTCTGCCGCTGCAGACTCACAGAGATCTATTCCCACGCCGTTTCTCACCAAAACCTTTCAACTCGTCGACGACGAAGCCATCGACGATGTTATCTCCTGGAACGACGACGGATCAACGTTCATCGTTTGGAACCCTACCGTCTTCGCCAGAGACTTGCTTCCTAAATATTTTAAACACAACAATTTCTCCAGCTTCGTTCGCCAACTCAACACTTACGGATTCAGGAAGGTCGTACCTGATCGGTGGGAATTCTCGAACGAGTGTTTCCGCCGAGGCGAGAAGCGGCTTCTGAGTGAAATTCAACGGCGGAAGATTTCGTTGCCGGCGCCGACTCCGTGTCTGACTGCGTCGGCAACGGTTGTTGTTCCGTCGCCGATGCCGTTGACTGCGATTCCGATCATATCCCCGTCGAACTCCGGCGAGGAGCAGGTGATATCGTCAAACTCGTCACCGTCGCTCGCGCCGGCGGAGCTCATAGACGAGAACGAGAGGCTGAGGAAGGAAAACGTTCTGTTGACCAAAGAGCTCGCAGAGATGAGATCGCTCTGCAATAACATCTATGCTCTCATGTCAAATTACGCCAACGCCAACGGTAACACTAACGGTAACGGAAGTTACCAAACGGACGGCGGGGCTGGTGGCGCTCAGGGAAGTAGGGAGTCCGGCATGACGGCGTTGAAGCCGCTCGATTTGATGCCGACGAAACGGATCCCCGTTGAGGACGCGGCGGAGGTGATGAATCCGAAGCTATTCGGTGTGGCGATTGGAGCGAAGCGCGCGAGGGAGGGAGGAGGAAGTTGGGTAGATTGTGGAGAAGAAAGTGGAGGAAAGAAAGATACGCTGTTGCGTTTGCATCACCCAAGTCCTGCGGACGTGAAACCTGAGCCGTTGGATTGCCAGAGCCATCGCGAGAATCAGGAAACGCCGTGGTTAAGTCAGTGTCACATAACAAATCAGAGGGTGTGTAACTGA 1023 0.5474 MAQPPPVEHNADSTTTASAAADSQRSIPTPFLTKTFQLVDDEAIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKRLLSEIQRRKISLPAPTPCLTASATVVVPSPMPLTAIPIISPSNSGEEQVISSNSSPSLAPAELIDENERLRKENVLLTKELAEMRSLCNNIYALMSNYANANGNTNGNGSYQTDGGAGGAQGSRESGMTALKPLDLMPTKRIPVEDAAEVMNPKLFGVAIGAKRAREGGGSWVDCGEESGGKKDTLLRLHHPSPADVKPEPLDCQSHRENQETPWLSQCHITNQRVCN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00649 340 SUPERFAMILY "Winged helix" DNA-binding domain 28 120 IPR036390 -
Phco5g00649 340 FunFam Heat stress transcription factor B-4 23 121 - -
Phco5g00649 340 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco5g00649 340 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco5g00649 340 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco5g00649 340 Coils Coil 179 199 - -
Phco5g00649 340 MobiDBLite consensus disorder prediction 8 24 - -
Phco5g00649 340 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco5g00649 340 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco5g00649 340 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco5g00649 340 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 23 212 IPR027725 -
Phco5g00649 340 Gene3D - 23 121 IPR036388 -
Phco5g00649 340 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00649 Phco-Chr5 6559662 6560789 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco5g00649 HSF_DNA-bind 7e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00649 5 6559662 6560789 Phco5g00649 5 6559662 6560789 ECH
Phco5g00649 5 6559662 6560789 Phco6g02506 6 46474282 46476425 PCT