Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00646 ATGACTTCAAGTTCAAGACCAAGTGATGGTGAAGAAAAGGACTTTAATAAGGAAATTAGAATTCTGCAAGAACAAGTGTATAGAGCAAATCATTGGTCAGTAGTACCTCTTGTTGGTGAAGACCAACCTAGTGGTCATGCTGAAGACAATCCCAATGCTCCTAAAGACGTACCCCTTCATGAAATGAAGATATATAGAAGAATGTGTTCATTGCAAAGACGGCACTTAAACCGGTCGTTTCCAGATGCTGCATTCAATGGATTTGGATACTTCTTCACCTACAAAATCAATACCTCCACGGCAAGTCATGAATGTGAGACTTCTAACATAGTTAATAACAAAGGAATTAATAATGATGATGATTTGGTTCCTACAGTGGGCATGTGTTTTGATAATGCTGATAGTGTTAAAAATTTTTATCGACAATATGCCATTTCAAAGGGTTTTGGCATTAGAACACGAAGTTCTAAGAAAGGACCAGACAAAGAGCTAAGGTACTTCATGTTAGTGTGTGCAAGAGCTGGAAAATATGTCTCGCCTATTCCGACTGAGGTTAATACCCAACCAACTCAAACAATTGAATGTCCGGCTCGAATAACAGTTGGCACAAAAAATGGAAAGTGGTATATTATGTCTGTGCACCAAGAACATTCACATGACCTTAGCCCAACAAAGTCACGGTTGTTTCGAGGTAATAGAAGAATCAATTTACATACAAAGAGGGCGCTTGATATCAATGACGATGCTGGGGTACGAATTAATAAGAGTTTTCAATCGTTTGTTTCAGCAGCTGGTGGTTATGATAATCTAGAATTTGTTGAACGAGATGTGCGAAACTATATCGGGAAACAAAGGAGGGCTTTGGGAAAGGAAGGAGATGGGAAAGCATTGTTAACTCATTTCTCTCGTATGAGGGAGCTTAATCAACACTTTTTCTTTGACATTGATTTCGACATGGATAATCGCATCCGTCATATTTTTTGGGCAGATGCACGAAGTCGGGCAACGTGGGAAAGCTTTGGGGATGTTCTATGTTTTGATACTACGTATTTGACTAATAAATATGACATGCCGTTTGCACCATTTGTTGGTGTTAATCATCATGGCCAATCTATTTTGTTGGGTTGTGGACTACTATCTTCAGAAGACACAGATGGTTTTGTTTGGCTCTTTCAAACTTGGTTGCGATGTATGTCAAATAGGCCACCTAAAGGCATTGTGACTGACCAATGCAAGGCAATGCAGAATGCAATTGAAATTGTTTTTCCTAATGCACGTCACAGGTGGTGCTTATGGCACATCATGAAGAAAATACCTGAGAAGCTACAAGGCTATGGTCAATATAAACAAATGAAACATGCAATGAAGACCGTAGTGTATGAGTCCACCAATGTTGATGAATTTTTGTCATCCTGGGAAAATTTCATTAGTGCATATGATTTGAGTAACAATGTTTGGTTAACTACCCTATTTGAAGAACGACAACGTTGGGTCCCATGTTTTCAGAAGAATTTCTTTTGGGCAGGGATGTCAACAACACAAAGGAGCGAGAGCATGAACGCCTTTTTTGATGGCTATATCAATTCAATGACCACACTCCAACAATTTGTACATCAATATGACAATGCACTACAGAAGAAAGCACAATTAGAATGTGAATCAGACTTTGCTTCGTTGAACACCGTTATTCCGTGCACGTCGCAGTCTAGCATCGAAAGACAATTTCAAATGGAGTACACACATGCCAAATTCAATGAAGTGCAAGTACAATTTAGATTGAAAATGAATTGTGTTGCTCATAATGTGTTTGTTGAGGGACAAAGTTGTCGGTTCAATATTGTTGAAGAGTCCTTTTGTAACGAAAGAACTAAACACATGAACTTTCAAGTCTTTTTTAACCGGGATAACCTTGATATTTCCTGCACATGCTTGTTATTTGAGTTTAGGGGAATTCTGTGTCGACATTGCTTGGTTGTTCTTGCGCAAGAAAAAGTGGCACAAGTACCAATGAAATATGTCTTGAGCAGATGGAGTAAAAATGTTCGTCGAAAACACACCTACATAAGAGCTTCATGTGGGATGAAGGAGAATGATCCACAGATTGATAGATATGAGGGGTTATGCAGGAAATTTTATGATATAGCTGAAGTTGCAAGTGCCTCAACAAGTGCAACAGAACAATTACATAAGCGTCTTGATGATTTTTTGGCGAAAGACAGGGATAATCAACAAACATCTACAATTGTGACCCAAGCAATGTTGTCTGTCCTTGGTCCACCACCGATGTCTCCTAATCATATGACTTTGAACATGAACATGGAAGTTCGTAGCCCCATCGCTGTTAAAAGAAAGGGACGACCACGGTCTACACGAAAGAAGTCATGGATTGAGAGAGGTCCTCGACTAAAAAAGTCATGTAGTACACACCAAGTTGGCATTATTCGTAATTTGGAGACGCATGAACAAAGAAATGTTGTAGATGTTCCTTCTCGGGTGTGTATTGAAAGTGAAGTGAATGTGAACACATGCATTGGGATAACACATGCAGTTGAAGGGGTTTCTGTTCTAAGCGGAGGTTCTATTGGATTCCTTTCGCTTTTGACATCATTGGATAATACTGCCATAATGTAA 2631 0.3919 MTSSSRPSDGEEKDFNKEIRILQEQVYRANHWSVVPLVGEDQPSGHAEDNPNAPKDVPLHEMKIYRRMCSLQRRHLNRSFPDAAFNGFGYFFTYKINTSTASHECETSNIVNNKGINNDDDLVPTVGMCFDNADSVKNFYRQYAISKGFGIRTRSSKKGPDKELRYFMLVCARAGKYVSPIPTEVNTQPTQTIECPARITVGTKNGKWYIMSVHQEHSHDLSPTKSRLFRGNRRINLHTKRALDINDDAGVRINKSFQSFVSAAGGYDNLEFVERDVRNYIGKQRRALGKEGDGKALLTHFSRMRELNQHFFFDIDFDMDNRIRHIFWADARSRATWESFGDVLCFDTTYLTNKYDMPFAPFVGVNHHGQSILLGCGLLSSEDTDGFVWLFQTWLRCMSNRPPKGIVTDQCKAMQNAIEIVFPNARHRWCLWHIMKKIPEKLQGYGQYKQMKHAMKTVVYESTNVDEFLSSWENFISAYDLSNNVWLTTLFEERQRWVPCFQKNFFWAGMSTTQRSESMNAFFDGYINSMTTLQQFVHQYDNALQKKAQLECESDFASLNTVIPCTSQSSIERQFQMEYTHAKFNEVQVQFRLKMNCVAHNVFVEGQSCRFNIVEESFCNERTKHMNFQVFFNRDNLDISCTCLLFEFRGILCRHCLVVLAQEKVAQVPMKYVLSRWSKNVRRKHTYIRASCGMKENDPQIDRYEGLCRKFYDIAEVASASTSATEQLHKRLDDFLAKDRDNQQTSTIVTQAMLSVLGPPPMSPNHMTLNMNMEVRSPIAVKRKGRPRSTRKKSWIERGPRLKKSCSTHQVGIIRNLETHEQRNVVDVPSRVCIESEVNVNTCIGITHAVEGVSVLSGGSIGFLSLLTSLDNTAIM 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00646 876 ProSiteProfiles Zinc finger SWIM-type profile. 628 664 IPR007527 GO:0008270
Phco5g00646 876 SMART 26again6 639 666 IPR006564 GO:0008270
Phco5g00646 876 Pfam SWIM zinc finger 636 660 IPR007527 GO:0008270
Phco5g00646 876 Pfam FAR1 DNA-binding domain 138 222 IPR004330 -
Phco5g00646 876 Pfam MULE transposase domain 343 437 IPR018289 -
Phco5g00646 876 Coils Coil 533 553 - -
Phco5g00646 876 PANTHER OS01G0519700 PROTEIN 117 804 - -
Phco5g00646 876 MobiDBLite consensus disorder prediction 38 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00646 Phco-Chr5 6466314 6474808 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Phco5g00646 MULE 2.7e-36 CL0219