Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00639 ATGGAAGGTCGTAGTGAAATGGGGCTAATTGGAGAGAGTTTTGATACGAGTAATTTGCTGGGGAGGCTTAGGGATGATGACTATGAAAGTCGGTCAGAAAGTGATAATTTTGATGGTGGATCTGGTGATGATCAAGATGTTGGCGATGATCAACCACAAAGAAAGAAGAAGAAATACCATAGACACACTCCTCAACAAATCCAGGATCTTGAAGCATTCTTTAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGAACAGATCTCAGTAAGAGGCTTGGCTTGGAGAATAAGCAAGTGAAGTTCTGGTTTCAGAATCGACGAACCCAAATGAAAACACAATTGGAAAGGCACGAGAACATGGTTCTTAAGCAGGAGAATGACAAGCTCAGAGCTGAGAATGGTGTAATGAAGGAAGCTTTGGCTAATCCTATATGTAACAACTGTGGTGGTCCAGCCATTCCTGGTCAAATTTCATTGGAGGAGCACCAGACTAGAATTGAAAACGCTCGTCTGAAGGATGAACTGAACCGAATATGTACATTAGCAAACAAGTTCTTGGGCAGGTCCCTCTCATCACTGGCCACTCCTATGTCTCTGCCACCCACAAATTCTGGTCTTGAACTTGCCATTGGAAGAAATGGAATTGGTGGTTCAAGCAATTTTGGCATGCCCTTGCCAATTGGGTTTGATGTGGGTGATGGAGCTTTGGGCTCCTCACCTGCAATGCCAAGTATGGGTGCTAGAGTACCAGTGGGAATGATGGGAAACGAAATCCATCTAGAAAGATCTATGCTTATAGATATTGCAATAAATGCTATGGATGAATTAGTTAAGATGGCTCGACAAGATAACCCTCTTTGGATTAAGAGTTCTGATGGTAGGAACGAAGTACTAAACTGTGAGGAATACGCAGGAATATTTCCTACGTTTGTTGGAACAAAACCTGCTGGTTATGTAACTGAAGCTACAAGGGCTACTGGAGTTGTATTAGCCAGCAGTTTGGGGCTTGTGGAAACATTCATGGATGTGGATCGATGGTCAGAGATGTTTTCATCTATGGTGGCTAGTGCTTGCACTTTGGATGTATTATCTAGCGGCACAAATGGAACGAGAAATGGAGCTTTGCAAGTGATGTTAGCTGAATTTCAACTGCTTTCCCCACTGGTCCCTACTCGTCAATTGAGTTTCCTCAGGTTTTGCAAGCAACATGCTGAAGGTGTATGGGTTGTGGTTGATGTTTCTGTTGATATCATTCGTAATGCTGCCAATTCACATCCATTAATGAGTTGTAAGAGGCTTCCTTCTGGTTGTATCATTCAGGACATGCCCAATGGTTTGTCCAAGATTACATGGGTTGAACATTCTCAGTATGATGAGAGTGTGATCCACCAACTTTGTCGTCCATTGGTTAGTTCTGGCATTGGCTTTGGTGCTCAGAGATGGATTGCATCTCTCCTAAGACAGTGTGACTGCTTGGCAATCCTCATGTCCCCTCCTGCTCCATCTGACGACCCTATAGTCCTCAGCCAATCCAATAGGAGAAGCATCATGAAACTGGCACAACGCATGACTGAGTACTTCTGCTCAGGAATTTGTGCTTCATCTGCACGCAAGTGGGATGTTCTTCACATTGGTAGTCTGGCTGATGACATGAAAATCATGGCCAGGAAAATTGTGGACGACCCAAATGAGGCTCCTGGCATTGTATTGAGTGCTTCAACTTCTGTCTGGATGCCTGTTTCCCGACAAAGGGTGTTTGACTTTTTACGTAATGAACAGTTGAGAGGGGAATGGGACATGTTGTCCAAAGGTGGTCCCATGAAGGAGATGCTCCATGTTCCTAAAGGCCAAGAACATGGAAACTGTGTTTCCATCCTTCATTATGCTAATAATAATGAGAGTAATATGTTTTATCTGCAAGAGTCATGGACTGATGCATCTGGCTCAATGGTTGTATATTCTCCCATCAACATGCAATCTTTGAACATGATGATGAACTGTGGAGATTCATCATTTGTGGCTCTTCGTCCCTCAGGATTTGCTATTCTGCCAGACGGCCACTCCAACAACAGTGACAACAATGATGGTGGCGGTAGCTGTTTGCTAACCGTTGGATTACAAATGTTACAGAATGACAACCAATCAGCTAAGTTCACAATGGAGTCAGTTCAAACTGTGAATTCCCTCCTTTCATGCACCATTCAAAAGGTCAAAGAAGCATTAGGAGTTTCATGA 2235 0.4358 MEGRSEMGLIGESFDTSNLLGRLRDDDYESRSESDNFDGGSGDDQDVGDDQPQRKKKKYHRHTPQQIQDLEAFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENMVLKQENDKLRAENGVMKEALANPICNNCGGPAIPGQISLEEHQTRIENARLKDELNRICTLANKFLGRSLSSLATPMSLPPTNSGLELAIGRNGIGGSSNFGMPLPIGFDVGDGALGSSPAMPSMGARVPVGMMGNEIHLERSMLIDIAINAMDELVKMARQDNPLWIKSSDGRNEVLNCEEYAGIFPTFVGTKPAGYVTEATRATGVVLASSLGLVETFMDVDRWSEMFSSMVASACTLDVLSSGTNGTRNGALQVMLAEFQLLSPLVPTRQLSFLRFCKQHAEGVWVVVDVSVDIIRNAANSHPLMSCKRLPSGCIIQDMPNGLSKITWVEHSQYDESVIHQLCRPLVSSGIGFGAQRWIASLLRQCDCLAILMSPPAPSDDPIVLSQSNRRSIMKLAQRMTEYFCSGICASSARKWDVLHIGSLADDMKIMARKIVDDPNEAPGIVLSASTSVWMPVSRQRVFDFLRNEQLRGEWDMLSKGGPMKEMLHVPKGQEHGNCVSILHYANNNESNMFYLQESWTDASGSMVVYSPINMQSLNMMMNCGDSSFVALRPSGFAILPDGHSNNSDNNDGGGSCLLTVGLQMLQNDNQSAKFTMESVQTVNSLLSCTIQKVKEALGVS 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00639 744 SMART START_1 267 491 IPR002913 GO:0008289
Phco5g00639 744 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Phco5g00639 744 Pfam Homeodomain 56 111 IPR001356 GO:0003677
Phco5g00639 744 Pfam START domain 268 490 IPR002913 GO:0008289
Phco5g00639 744 MobiDBLite consensus disorder prediction 1 64 - -
Phco5g00639 744 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Phco5g00639 744 Gene3D - 43 129 - -
Phco5g00639 744 SMART HOX_1 55 117 IPR001356 GO:0003677
Phco5g00639 744 Coils Coil 107 127 - -
Phco5g00639 744 CDD homeodomain 56 113 IPR001356 GO:0003677
Phco5g00639 744 ProSiteProfiles START domain profile. 258 494 IPR002913 GO:0008289
Phco5g00639 744 MobiDBLite consensus disorder prediction 19 38 - -
Phco5g00639 744 Gene3D - 267 475 IPR023393 -
Phco5g00639 744 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 53 741 IPR042160 -
Phco5g00639 744 SUPERFAMILY Homeodomain-like 37 113 IPR009057 -
Phco5g00639 744 SUPERFAMILY Bet v1-like 513 708 - -
Phco5g00639 744 CDD START_ArGLABRA2_like 262 489 - -
Phco5g00639 744 FunFam Homeobox-leucine zipper protein HDG1 41 129 - -
Phco5g00639 744 SUPERFAMILY Bet v1-like 261 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00639 Phco-Chr5 6363970 6366928 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco5g00639 START 3.5e-45 CL0209