Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00588 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTTATCCAGTTTTCTAATAGCTCCAACCACCAGCAACACAAAATCTCCCAAGATCTGATTCTGGATGATTATGCTTCACTGGATGACAATGTTTCTGGGGAAAAATTCTCTAGAAGCCAACCAGAGAATCTTTTCTGTGAGGCAAATAAAAAGAATCATGACTCTAACGAACATATGAAGAAGATGATTCACAAGGAGATCGAAAGGCAAAGGAGACAAGAAATGGCTACCTGCTATGCCTCTCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGTGAATTACATAAAGCACATGCAGAACAATATCAAAGAGCTTGGTGCCAAGAGAGATGAACTGAAGAAACTTTCCAGTCATAGCAATATGGAAAATAGCCATGAGGGCTTGCATACATCTTGCAACTTTACTGTCCACGAGAATAATGGTGTTATAGGAATCGAAATCACAAGTGGCTTCAAAGAGGAAAAGCCTAAAGTTTCGAAGTTACTACAATTACTGATTCAAGAAGGTCATGAAGTTGTTAGTTGCCTTTCATCAGAAGTCAATGGTAGATTGCTCCACAGTGTGCAGTGTGAGGTAAACAATTCCAACTGTGTAGATCTATCTGAGCTCAGAAGGAAAGTTTCCAAAGCATTTCCATCATTTACATGTTCTGATTAA 726 0.3981 MFPLQRGNELVIQFSNSSNHQQHKISQDLILDDYASLDDNVSGEKFSRSQPENLFCEANKKNHDSNEHMKKMIHKEIERQRRQEMATCYASLRSLLPLEFIKGKRSISDHMNEAVNYIKHMQNNIKELGAKRDELKKLSSHSNMENSHEGLHTSCNFTVHENNGVIGIEITSGFKEEKPKVSKLLQLLIQEGHEVVSCLSSEVNGRLLHSVQCEVNNSNCVDLSELRRKVSKAFPSFTCSD 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00588 241 SMART finulus 75 127 IPR011598 GO:0046983
Phco5g00588 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 140 IPR036638 GO:0046983
Phco5g00588 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 121 IPR011598 GO:0046983
Phco5g00588 241 Gene3D - 60 155 IPR036638 GO:0046983
Phco5g00588 241 Coils Coil 118 138 - -
Phco5g00588 241 CDD bHLH_AtORG2_like 70 146 - -
Phco5g00588 241 FunFam Transcription factor bHLH126 61 149 - -
Phco5g00588 241 Pfam Helix-loop-helix DNA-binding domain 70 122 IPR011598 GO:0046983
Phco5g00588 241 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 59 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00588 Phco-Chr5 5603000 5604133 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco5g00588 HLH 3.9e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00588 5 5603000 5604133 Phco5g00588 5 5603000 5604133 ECH
Phco5g00588 5 5603000 5604133 Phco6g02547 6 47022906 47024496 PCT