Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00582 ATGGCTTCTTCCTATACCATTTTCTTCCTCTTAATCCTTGTTACCTGCCTCACTTTTGCAACTACTCAGACGGAGACCGACTCCTACCCTGTCTATCTATACCATAATTGCTCTGGGGGCAACACTACAGATGGCAGCTCCTTCCAATCCAATCTCAAGACTCTACTCTCCTCTTTATCACATAACGCTCCCGGAAACAACGGATTCTACAACAACACAGTCCCTTCACAAAACCCCTTGGACTCTGTCTTTGGACTTTTCATGTGTAGGGGTGACGTCCCTTCTCAGCTTTGTCAACAATGTGTCCAAAATGCAACTCAACGATTATCCTCAGAGTGCTCGTTGGCCAAGCAAGTTGTGATTTGGTACGATGAGTGCACCGTTCGTTATTCCAACACCTCGTTCTTCTCTACTGTGTCCATCAGACCTAGGATTGCCCTATTAAACATTGAAAATATCTCAAACCAGGAAAGTTTCATGCATTTCTTGTTCTCGGTCCTGAACGAAACTGCAGATGTTGCTGCTGCTGCTGCTGGTAACAAGTTCGCCACAAGGCAAACAAATATTTCTGGATTTCAGAGCGTTTATTGTTTAGCTCAGTGTACTCCGGACCTGTCACCTAGTGATTGCAGAAGGTGTCTGAGTGGAGTGATAGGGGACCTTCCATGGTGTTGCCAAGGGAAGCAAGGAGGGAGAGTTCTGTATCCGAGTTGTAATGTTAGGTATGAACTGTACCCTTTCTATCGCTCGAATAGTACACCAAAGTGGGTTCCTGCATCAAAATTTGGATATGCAGATTCAAGATTTTCAAAAGATCCAACTTATCTAAACCATAGTTGCTCAACTAATATAACTACTGACGACACTTTCAAAATGTATCTAAGGACCCTCTTCTCTTACATGTCTTCCAATGCCACCAATGGCAAAGTCTTTTATAAGGGCGGTGTGGAGAATACTGTGAATGGACTCTTCATGTGTCAAGGTGGTCTCCCATCTCGATTTTGTGAAAAATGCATCCTCAATGCAACCCACCTAATATCCTCAGAGTGCAATTTGTTTCAAGAGGCTGTAATTTGGTACACCCACTGCATGCTTCGCTATTCCAATCGCTATTTCTTCTCCCAAGTGGAAAAAAGTCCAACTTTTCAAATGTTGAACGCCACCAGTGCCTTTAGCCCTGCTCGAGAGCAAGGGTTCACCTTTACACTATCAAATCTGTTGGCTAATCTGGCGAAGGAGACACGGGATAGTGATGAGAGATATTTGATAAAATCATCAAAATTGAATGATTTACAAACCCTTTATGCACTTAGCCAATGTACACAGGATTTGTCTAGTGATGATTGTAAGGGTTGTTTGGAAGATATAATTGGAAATATCCCTTGGTTTCTCTTGGGAAGCGTGGGGGGAAGAGTTTTGTATCCCAGTTACAATCTCAGATTTGAATTGTTCCAATTTTTCTGGATTCCTGACCAACTTCAACAGCCAACATCCAATGATCCTTCTCCATCATCCCATAACGAAAAAGGAAAAGCACACTTGCGAACAATCATCTTGATTATAGTACCTACAGTTGTTTCAATGATACTCTTCTTTTTGGGCTACTATTTGATAAAGAGCAAAGCAAGAAAAAGTGTTAAGACTATTCTAAAAGAAAATTTTGGTCATGAAAGTGTCATTTTAGAGCCTTTGCAATATAGTTTGGCAGTAATTAAAGCCGCAACCAACAACTTTTCAAGTGAAAATAGAATTGGAAAAGGTGGATTTGGAGAAGTTTATAAGGGTATTCTCCTTGATGGTCAACAAATAGCGGTAAAGAAACTCTCAAAAAGCTCTAAGCAAGATTCTCAACAAGCAAATATGTTAAGGTGGTCGGAAAGATATAACATAATTGGAGGGATTGCTCGAGGAATTCTTTATTTACATGAATATTCTCGACTCAAAGTCATACATCGTGATCTTAAACCTAGTAATATTTTATTAGATGAAAACATGATTCCAAAAATTTCAGATTTTGGTTTGGCTAGAATTATTGAAATACATGAAGACCAAGCGAGTACAAATAGAATTGTTGGAACATATGGTTACATGTCCCCGGAATATGCAATGCTCGGACATTTTTCAGAAAAATCAGATGTTTTTAGTTTTGGAGTAATGGTTTTAGAGATTATTAGTGGAAAAAGGAATACAAATTCTTATCAACCACATGGTACAGGTGACGGCCTCTTAAGTTATGTTTGGAGACAATGGAGGGATCGAACTATGTGCATATTAGACCCTACTATTAAAGAAAAATATTCTGAACAAGAAGTTCTTAGATGCACTCAAATTGGTTTATTGTGTGTTCAACAAAATCCTGATGCAAGACCAACAATGATGGAAGTTGTTTCATATTTTAGCAATCATTTGATTGAATTGCCAGATCCAGACGAACCTGCATTTTTCTTGCATGGAAGAATGGATTCAAAATCATTTCCACCTTCCAAACAACATACCAATGGTTGCACCCCATTTTCCATTAATGAATTGCCAACAAGTCAATTTCTTCCTCGATAA 2556 0.3936 MASSYTIFFLLILVTCLTFATTQTETDSYPVYLYHNCSGGNTTDGSSFQSNLKTLLSSLSHNAPGNNGFYNNTVPSQNPLDSVFGLFMCRGDVPSQLCQQCVQNATQRLSSECSLAKQVVIWYDECTVRYSNTSFFSTVSIRPRIALLNIENISNQESFMHFLFSVLNETADVAAAAAGNKFATRQTNISGFQSVYCLAQCTPDLSPSDCRRCLSGVIGDLPWCCQGKQGGRVLYPSCNVRYELYPFYRSNSTPKWVPASKFGYADSRFSKDPTYLNHSCSTNITTDDTFKMYLRTLFSYMSSNATNGKVFYKGGVENTVNGLFMCQGGLPSRFCEKCILNATHLISSECNLFQEAVIWYTHCMLRYSNRYFFSQVEKSPTFQMLNATSAFSPAREQGFTFTLSNLLANLAKETRDSDERYLIKSSKLNDLQTLYALSQCTQDLSSDDCKGCLEDIIGNIPWFLLGSVGGRVLYPSYNLRFELFQFFWIPDQLQQPTSNDPSPSSHNEKGKAHLRTIILIIVPTVVSMILFFLGYYLIKSKARKSVKTILKENFGHESVILEPLQYSLAVIKAATNNFSSENRIGKGGFGEVYKGILLDGQQIAVKKLSKSSKQDSQQANMLRWSERYNIIGGIARGILYLHEYSRLKVIHRDLKPSNILLDENMIPKISDFGLARIIEIHEDQASTNRIVGTYGYMSPEYAMLGHFSEKSDVFSFGVMVLEIISGKRNTNSYQPHGTGDGLLSYVWRQWRDRTMCILDPTIKEKYSEQEVLRCTQIGLLCVQQNPDARPTMMEVVSYFSNHLIELPDPDEPAFFLHGRMDSKSFPPSKQHTNGCTPFSINELPTSQFLPR 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00582 851 Pfam Protein kinase domain 628 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00582 851 ProSiteProfiles Gnk2-homologous domain profile. 141 247 IPR002902 -
Phco5g00582 851 ProSiteProfiles Gnk2-homologous domain profile. 272 372 IPR002902 -
Phco5g00582 851 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 30 134 - -
Phco5g00582 851 SMART serkin_6 578 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00582 851 ProSiteProfiles Protein kinase domain profile. 503 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00582 851 Gene3D Transferase(Phosphotransferase) domain 1 620 804 - -
Phco5g00582 851 Gene3D Phosphorylase Kinase; domain 1 552 619 - -
Phco5g00582 851 ProSiteProfiles Gnk2-homologous domain profile. 30 135 IPR002902 -
Phco5g00582 851 ProSiteProfiles Gnk2-homologous domain profile. 378 486 IPR002902 -
Phco5g00582 851 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672|GO:0006468
Phco5g00582 851 Gene3D - 30 135 IPR038408 -
Phco5g00582 851 Gene3D - 144 247 IPR038408 -
Phco5g00582 851 Gene3D - 272 372 IPR038408 -
Phco5g00582 851 Gene3D - 381 486 IPR038408 -
Phco5g00582 851 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 7 254 - -
Phco5g00582 851 FunFam Cysteine-rich receptor-like protein kinase 25 143 247 - -
Phco5g00582 851 FunFam cysteine-rich receptor-like protein kinase 10 607 806 - -
Phco5g00582 851 FunFam Cysteine-rich receptor-like protein kinase 25 380 486 - -
Phco5g00582 851 ProSitePatterns Protein kinases ATP-binding region signature. 584 607 IPR017441 GO:0005524
Phco5g00582 851 Pfam Salt stress response/antifungal 37 132 IPR002902 -
Phco5g00582 851 Pfam Salt stress response/antifungal 396 482 IPR002902 -
Phco5g00582 851 Pfam Salt stress response/antifungal 152 245 IPR002902 -
Phco5g00582 851 Pfam Salt stress response/antifungal 280 369 IPR002902 -
Phco5g00582 851 SUPERFAMILY Protein kinase-like (PK-like) 561 826 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00582 Phco-Chr5 5527508 5534972 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco5g00582 Pkinase 1.6e-27 CL0016