Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00581 ATGGCTTCCTGTAACATTTTCTTTCTCTTAATCCTTATTAGGTTCGTCACTTTTGAAATTACTCCGGCAGAGACCGCCTCCAACCCTGTCTATATATACCACAATTGCTCTGGGGGCAACACTACAGATGGCAGCACCTTCCAATCTAATCTCAAGATCCTACTCTCCTCCTTATTAGATAACACCCCTGCCAATAACGGATTCTATAACAACACAGTCTCTTCACAAAACTCCTCGAACTCTGTTTTTGGACTTTTTATGTGCACAGGTGAAATCCCTTCTCAACTTTGTCAACAATGTGTCCAAAATGCAACCCAACGATTATCCTCAGAGTGCTCGTTAGCCAAGCAAGCTGTGATTTGGTACGACGAGTGCATGGTTCGTTACTCCAACACTTCGTTCTTCTCTACTGTATCCATCAGACCTAGGGTTGGCCTGTTGAACACAGCTAATATCACAAACGAGGAAAGTTTCATGGAATTATTGTTTCAGACCATGAACAAAACTGCAGATGCTGCTGCTGTTGATAACAAGTTTGCAATAAGGGAAGCAAATATTTCTAATTTTCAGAGTCTTTATTGTCTAGCTCAGTGTACTCCGGACCTGTCACCCAGTGATTGCAGAAGGTGTCTGAGTGGAGCGATAGGAGACCTTCCATGGTGCTGCCAAGGGAAGATAGGAGGGAGAGTTCTGTATCCAAGCTGTAATGTTAGGTATGAACTCTACCCTTTCTATCGCTTCACAGAAGCGCCTGAAGATTCAGAGTTATCAGAAGATCCAATTTATCTAAGTCACAAATGTTCAACTAATGTAACTGCTGACAGCGATTTCAAAGTACATCTTAGCACCCTCTTCTCTTACATGTCTTCCAATGCCACCAACCAAATGGATTATAAAGATGGTGTTGAAGATACTGTGTATGGCCTCTTCATGTGCCGAGGTGACCTTCCCTCACGCCTCTGTCAACAGTGTGTCCTCAACGCAACGCACCGAATATCTTCAGATTGCAATTCGTTTCAAGAGGGTGTAATTTGGTATAGCCACTGCATGCTTCGCTATTCCTATCGTCATTTCTTTTCCCAAGTGGAAAAAAGTCCAGCTTATAAAATCCTGAGTCTTATCAATACCTTCAGCGATGTTAAGGAGCAAAACTTATTCACTTATGGATTAACAAAAACGTTAAATAATCTTATTGAGGCAGCACCGCTCAGTAGCGCGAGATATGTGACGAAATCTTCACAAATGGATGATTCACAAACCCTTTATGTTCTTGCCCAATGTACGCAGGATTTGTATGGTGATGATTGCATGGATTGTCTGGAAGATATATATAAAAACATGCCATTCTCTCAACTGGGAAACCCAGGGGGAAGAATTCTATATCCTAGTTGCAATATCAGATATGAATTTTTCCAATTTTACAGAGATCCTCAACGACAGGGGCTTGGTAATTCTTCTCCACCAGTTCTTAAAGAAAAAGGAAAAAGACGATTGCGAACAATTATCTCGATTGTTCTACCCACTACAATTTCAGTGATACTCTTCATTTTTGTCTACTATTTGATAAAGAGAAAAGTAAGAAGGAGTGCTAAGTCTATTCTTAGAGAAAATTTTGGTTACGAAAGTGCCACTTTAGAGCCATTACAGTTCAGTTTGGCAGTAATTGAAGCAGCTACCAACAATTTTTCAAATGATAAGAGGATTGGAAAAGGTGGGTTTGGAGAAGTTTATAAGGGTATTCTTTTTGATGGCCGACAAGTAGCAGTGAAAAAACTCTCAAAAAGCTCTAAACAAGGAGTAAATGAGTTTAAGAATGAAGTTTTATTGATAGCCAAGCTTCAACATAGAAATCTTGTGACATTCATTGGCTTTTGTCTAGAAGAAGAACACAAAATACTTATTTATGAATATGTGCCCAACAAGAGCCTTGACTATTTTTTATTTGATTCTCAAAGAACGCATTTGTTAAGTTGGTCTCAACGTTATGATGTAATTGGAGGAGTTGCTCGAGGAATTCTTTATTTACATGAACATTCTCGACTTAAAGTTATACATCGTGATCTTAAGCCTAGCAATATTTTATTAGATGAAAATATGATTCCGAAAATTTCAGATTTTGGTCTCGCTAGGATTGTTGAAATAAATCAAGATGAGGGGAATACAAATAGAATCGTTGGAACATATGGTTATATGTCTCCGGAATATGCAATGTTTGGACAATTTTCAGAAAAATCAGATGTTTTTAGTTTTGGAGTGATGGTTCTAGAGATTATTACTGGAAAAAAGAATTCAACTTCTTATGATCAACCACATGGAGTTGCTAATAGCCTTTTGAGTTATGTGTGGAGGCAATGGAGGGATGAGACAATATTAAGCATATTAGACCCAAGTGTTAAAGAAAAATATTCAGAACAGGAAGTTTTGATATGCATTCAAATTGGTTTATTATGTGTGCAACAAAATCCTCATGCTAGACCATCAATGGTGAAGATTGTTTCATATCTTAGCAATTATTTAGTTGAATTACCAAGACCAGAGGAACCCACATTTTTCTTGCATGGTACAATGGATTCAAAAGCACTTATACAAGAACCTTCTTCTAGTGGTTGCATTCCATTATCTCTTAATGAAATGCCAACAAGTCAATTTCTTCCTCGATAG 2661 0.3818 MASCNIFFLLILIRFVTFEITPAETASNPVYIYHNCSGGNTTDGSTFQSNLKILLSSLLDNTPANNGFYNNTVSSQNSSNSVFGLFMCTGEIPSQLCQQCVQNATQRLSSECSLAKQAVIWYDECMVRYSNTSFFSTVSIRPRVGLLNTANITNEESFMELLFQTMNKTADAAAVDNKFAIREANISNFQSLYCLAQCTPDLSPSDCRRCLSGAIGDLPWCCQGKIGGRVLYPSCNVRYELYPFYRFTEAPEDSELSEDPIYLSHKCSTNVTADSDFKVHLSTLFSYMSSNATNQMDYKDGVEDTVYGLFMCRGDLPSRLCQQCVLNATHRISSDCNSFQEGVIWYSHCMLRYSYRHFFSQVEKSPAYKILSLINTFSDVKEQNLFTYGLTKTLNNLIEAAPLSSARYVTKSSQMDDSQTLYVLAQCTQDLYGDDCMDCLEDIYKNMPFSQLGNPGGRILYPSCNIRYEFFQFYRDPQRQGLGNSSPPVLKEKGKRRLRTIISIVLPTTISVILFIFVYYLIKRKVRRSAKSILRENFGYESATLEPLQFSLAVIEAATNNFSNDKRIGKGGFGEVYKGILFDGRQVAVKKLSKSSKQGVNEFKNEVLLIAKLQHRNLVTFIGFCLEEEHKILIYEYVPNKSLDYFLFDSQRTHLLSWSQRYDVIGGVARGILYLHEHSRLKVIHRDLKPSNILLDENMIPKISDFGLARIVEINQDEGNTNRIVGTYGYMSPEYAMFGQFSEKSDVFSFGVMVLEIITGKKNSTSYDQPHGVANSLLSYVWRQWRDETILSILDPSVKEKYSEQEVLICIQIGLLCVQQNPHARPSMVKIVSYLSNYLVELPRPEEPTFFLHGTMDSKALIQEPSSSGCIPLSLNEMPTSQFLPR 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00581 886 FunFam Cysteine-rich receptor-like protein kinase 25 369 473 - -
Phco5g00581 886 ProSitePatterns Protein kinases ATP-binding region signature. 568 591 IPR017441 GO:0005524
Phco5g00581 886 Gene3D Phosphorylase Kinase; domain 1 524 637 - -
Phco5g00581 886 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 185 860 - -
Phco5g00581 886 Pfam Salt stress response/antifungal 267 354 IPR002902 -
Phco5g00581 886 Pfam Salt stress response/antifungal 36 131 IPR002902 -
Phco5g00581 886 Pfam Salt stress response/antifungal 151 242 IPR002902 -
Phco5g00581 886 Pfam Salt stress response/antifungal 381 469 IPR002902 -
Phco5g00581 886 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 260 357 - -
Phco5g00581 886 Gene3D - 369 473 IPR038408 -
Phco5g00581 886 Gene3D - 261 358 IPR038408 -
Phco5g00581 886 Gene3D - 28 134 IPR038408 -
Phco5g00581 886 Gene3D - 143 244 IPR038408 -
Phco5g00581 886 ProSiteProfiles Gnk2-homologous domain profile. 29 134 IPR002902 -
Phco5g00581 886 FunFam Cysteine-rich receptor-like protein kinase 25 142 244 - -
Phco5g00581 886 ProSiteProfiles Gnk2-homologous domain profile. 259 358 IPR002902 -
Phco5g00581 886 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 29 133 - -
Phco5g00581 886 ProSiteProfiles Protein kinase domain profile. 562 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00581 886 SMART serkin_6 562 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00581 886 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 523 637 - -
Phco5g00581 886 Pfam Protein kinase domain 563 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00581 886 ProSitePatterns Serine/Threonine protein kinases active-site signature. 683 695 IPR008271 GO:0004672|GO:0006468
Phco5g00581 886 SUPERFAMILY Protein kinase-like (PK-like) 545 857 IPR011009 -
Phco5g00581 886 ProSiteProfiles Gnk2-homologous domain profile. 368 473 IPR002902 -
Phco5g00581 886 CDD STKc_IRAK 568 835 - -
Phco5g00581 886 FunFam cysteine-rich receptor-like protein kinase 10 638 842 - -
Phco5g00581 886 Gene3D Transferase(Phosphotransferase) domain 1 638 843 - -
Phco5g00581 886 ProSiteProfiles Gnk2-homologous domain profile. 140 244 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00581 Phco-Chr5 5494421 5498689 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco5g00581 Pkinase 5.4e-49 CL0016