Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00580 ATGGCTTCATACAAGATTCTCATCTTTATCCTTGCTAACTTCCTCAACTTTGCAATTAGTGAGCCACAAGATTATTCTCCACTCTACCAATACTGTTCCAGTGAACAAACCATTGACAATACTTCTCTCCAAGTTTATGTCAAAAAACTCCTTAATAACTTATCTTCTATATCATCTGGCCACACCCAATACAACACCAATTTCTCGTGTGCAAACCCTTCAGACTCTATCTATGGCTTGTTCATGTGTAGGGGTGACACTTCACCTGACCTCTGTCAACAATGCGTCCAAAGTGCAAAAAATAAACTATCCTCAGAGTGTTCTTTGTCCAAAGAATCTGTGACTTGGTACGAAGAGTGCATGGTTCGGTATTCCACCAACTACTTCTTCTCCAACGAGGCCACAATCCAGTGTAACACTGGCAAGGTGGTCTCAAACCCTGAAAAGTTCACGCAGTTATATTTTCAGACCATGAACCAAACAGCAGATGAAGCAGCACATGCTCCTATTGTTAACAACAATAACAAGATGTTTTCTACGAGGGAAGCACCCGTGTCTGATTTCCACACCCTTTATTGTCTAGCTCAATGCACACCAGATCTATCACGCAATGATTGCAGAACCTGTCTCGGTGACGCCATAAGGGATATTCCAAACTCTCCACAATGTTCTGGGGTGAGACTCGGAGGGAAAGTTCTTTATCCCAGTTGTAACATTAGGTATGAATCTTATCCTTTTTATCGTGTTCCACCAACAAACCCTTCACCCAACCTTGTTCCCGAAACAAAAACCTCTCTTCATGCAGATTTAAATTTTACAAAAGACCCTTTTTATCTCTCCCACAATTGCTCAAGTAACGAAACCCTCACTTCCAATAACACTTTGCAAATAAGCCTCACCACCCTTTTTTCTTACCTATCTTCCAACGCCACCAACAAGAGATATTACAAAGCTGATGTGAACAACACAGTTTATGGCCTCTTCATGTGTCGAGGTGACGTTCCCAATGGCGTGTGTGAAAAATGCGTTCAAAACGCAACACATCGAATAGCATTAGATTGCAACTCCTCCCAAGAGGCTATAGTTTGGTACAGCCAGTGCATGCTTCGCTATTCCTTCAGAAAATTTTTCAAAACGGTGGAGAGAAGTCCTATGTTTTGGAAGCTGAATAGGACTAGCAGAAACGAGGAACAAAGTTTCTTCAGTGTTACGTTAGCGAAGACGCTAGACAAGGTAGCAGTTATGGCAGGAGATAGTGATGAGAGATTTGGAAAATACTCAACGAAACTGAACGATAAACAAACCCTTTATACTCTTGCTCAATGCACGAAGGATTTGCCTACTGATGATTGCAAGGGTTGCTTGGGAAATTTGATTGGAACAGAAATTCCATGGTCTCGTTTGGGAAGCATAGGGGGAAGAGTTCTATATCCTAGTTGCAATCTCAGGTTTGAATTTCACCAGTTTTACTTCGACGATCCACCTGCAGGACCAATTCAATCAGAAAACAAAAGAAACAACGTACGAAGAATTATAATATTAGTTACTGTGCCCACAGTTATTTTGGTGAATCTCTCCTTCTTGGCTTGGTATTTTCAAAGGAGAAATACAAGAAAGAGCCATACCACTATTCTCAAGGAAAATTTTGGTCATGAAATTGCCGCTTTGGAGCCCTTGCACTTCAATTTGACAGCAATTGAGTTAGCAACTAATAACTTTTCCAACGATAACAAGATAGGTAGAGGTGGATTTGGAGAAGTGTATAAGGGTATTCTTCTTGATGGACGACAAATTGCTGTAAAAAGACTTTCAAAAAGTTCTAAACAAGACCAAGAAAGCACAGATTTAATTGTTGGAACATGTGGTTATATGTCTCCAGAGTATGCAATGTTTGGACAATTTTCTGAAAAGTCAGATGTCTTTAGTTTTGGAGTAATGATTTTAGAGATTACTACAGGGAGAAAGAATATACATTCAAGTGAAGCACGTCATATAGCTGATGGTCTCCTAAGTTATGTTTGGAAACAATGGAGGGATCAAACACCATTAAGCATATTGAATTCAAATATTAGGGAAAATTATGCTGAAATTGAAGTTATAAAGTGTATTCAGATTGGTTTATTGTGTGTTCAAGAAAATCCCGATGTTAGACCAACAATGGTAACAATTGTTTCATATCTTGATGGTCATTTTAGCGAATTGCCAACTCCACAAAAGCCTGCATTTTTCTTGCATGGAAGAAGGGATTCAAAATCTATTGGAAGGAAATCAAGTTCTAGGAAATCTATGAATATTTCTACACCATTATCAATCAATGAAATGTCTACAAGTGAATGTTTTCCTCGTTAA 2349 0.3912 MASYKILIFILANFLNFAISEPQDYSPLYQYCSSEQTIDNTSLQVYVKKLLNNLSSISSGHTQYNTNFSCANPSDSIYGLFMCRGDTSPDLCQQCVQSAKNKLSSECSLSKESVTWYEECMVRYSTNYFFSNEATIQCNTGKVVSNPEKFTQLYFQTMNQTADEAAHAPIVNNNNKMFSTREAPVSDFHTLYCLAQCTPDLSRNDCRTCLGDAIRDIPNSPQCSGVRLGGKVLYPSCNIRYESYPFYRVPPTNPSPNLVPETKTSLHADLNFTKDPFYLSHNCSSNETLTSNNTLQISLTTLFSYLSSNATNKRYYKADVNNTVYGLFMCRGDVPNGVCEKCVQNATHRIALDCNSSQEAIVWYSQCMLRYSFRKFFKTVERSPMFWKLNRTSRNEEQSFFSVTLAKTLDKVAVMAGDSDERFGKYSTKLNDKQTLYTLAQCTKDLPTDDCKGCLGNLIGTEIPWSRLGSIGGRVLYPSCNLRFEFHQFYFDDPPAGPIQSENKRNNVRRIIILVTVPTVILVNLSFLAWYFQRRNTRKSHTTILKENFGHEIAALEPLHFNLTAIELATNNFSNDNKIGRGGFGEVYKGILLDGRQIAVKRLSKSSKQDQESTDLIVGTCGYMSPEYAMFGQFSEKSDVFSFGVMILEITTGRKNIHSSEARHIADGLLSYVWKQWRDQTPLSILNSNIRENYAEIEVIKCIQIGLLCVQENPDVRPTMVTIVSYLDGHFSELPTPQKPAFFLHGRRDSKSIGRKSSSRKSMNISTPLSINEMSTSECFPR 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00580 782 ProSitePatterns Protein kinases ATP-binding region signature. 579 601 IPR017441 GO:0005524
Phco5g00580 782 ProSiteProfiles Gnk2-homologous domain profile. 382 489 IPR002902 -
Phco5g00580 782 ProSiteProfiles Gnk2-homologous domain profile. 277 376 IPR002902 -
Phco5g00580 782 FunFam Cysteine-rich receptor-like protein kinase 25 133 246 - -
Phco5g00580 782 Gene3D Transferase(Phosphotransferase) domain 1 616 736 - -
Phco5g00580 782 FunFam Cysteine-rich receptor-like protein kinase 25 384 489 - -
Phco5g00580 782 Pfam Protein tyrosine and serine/threonine kinase 622 727 IPR001245 GO:0004672|GO:0006468
Phco5g00580 782 Gene3D - 276 376 IPR038408 -
Phco5g00580 782 Gene3D - 385 489 IPR038408 -
Phco5g00580 782 Gene3D - 25 129 IPR038408 -
Phco5g00580 782 Gene3D - 132 246 IPR038408 -
Phco5g00580 782 ProSiteProfiles Gnk2-homologous domain profile. 131 246 IPR002902 -
Phco5g00580 782 ProSiteProfiles Gnk2-homologous domain profile. 25 129 IPR002902 -
Phco5g00580 782 Gene3D Phosphorylase Kinase; domain 1 533 615 - -
Phco5g00580 782 SUPERFAMILY Protein kinase-like (PK-like) 560 748 IPR011009 -
Phco5g00580 782 Pfam Salt stress response/antifungal 138 244 IPR002902 -
Phco5g00580 782 Pfam Salt stress response/antifungal 394 485 IPR002902 -
Phco5g00580 782 Pfam Salt stress response/antifungal 32 126 IPR002902 -
Phco5g00580 782 Pfam Salt stress response/antifungal 283 372 IPR002902 -
Phco5g00580 782 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 275 495 - -
Phco5g00580 782 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 276 375 - -
Phco5g00580 782 SMART tyrkin_6 573 727 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00580 Phco-Chr5 5465992 5469498 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco5g00580 PK_Tyr_Ser-Thr 1.1e-08 CL0016