Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00571 ATGAAAGGTGTGTTGCCTTTTCTTGGCAAGCTCAGAAGGCACTTTCTGTTGCTTCTTGTGGCAATGGAGCTCCTGCTGCTTCTTCTCTCTCCTTTTGCTTCTCCTCTCAGTGATGAAGGACAAGCATTGATGAAGATTAAGGCTTCATTCAGCAATGTAGCGGATGTTCTGCATGATTGGGATGATTTGCATAATGACGACTTCTGTTCCTGGAGAGGAGTCTTGTGTGACAATGTCAGCCTTACTGTTCTTTCTCTAAACTTGTCAAACTTGAACCTTGGTGGGGAGATACCACCGGCCATTGGTGACTTGGGAAACTTGCAATCCATAGACCTGCAAGGGAATAAACTAACTGGTCAAATTCCGGATGAAATTGGGAACTGTGCTGCTCTTATTTATCTGGATTTGTCTGATAATCAGCTATATAGTGATATACCTTTCTCCATATCAAAACTAAAGCAGCTTGTGTTCCTGAATTTGAAGAGTAATCAGTTGACTGGTCCTATCCCTTCAATTTTAACTCAAATTCCTAACTTGAAGACTCTCGATCTTGCACGAAATAGACTCACTGGTGAGATTCCAAGGGTACTCTACTGGAATGAAGTCCTGCAGTACCTCGGGTTGCGAGGGAACATGTTGAGTGGAACTCTGTCGCCTGATATCTGTCAATTAACTGGTTTGTGGTATTTTGATGTGAGAGGCAATAATTTGACTGGCACCATACCTGACAGCATTGGAAACTGTACAAATTTTGAAATATTGGATCTGTCATATAACCAGATTTATGGGGAGATTCCCTATAATATTGGATTTCTTCAAGTTGCTACTTTGTCACTTCAAGGAAATAGATTAACTGGTAAGATTCCGGAAGTCATTGGTTTAATGCAAGCCCTTGCCATTTTGGATTTGAGTGATAATGAGCTGATAGGACCCATCCCTCCCATACTAGGCAATCTGTCTTTTACTGGCAAGCTGTACCTTCATGGAAACATGATTACTGGACCAATACCTCCAGAACTTGGCAATATGTCAAGACTAAGCTACCTGCAATTGAATGACAATCAACTAGTTGGTCAAATTCCCGATGAACTTGGGAAGCTTGAACACTTGTTTGAATTGAATCTTGCCAATAATCATCTTGAAGGATCTATTCCACTTAACATTAGCTCTTGTACGGCCTTGAATAAGTTTAATGTGCATGGAAATCATTTAAATGGTTCAATTCCTTTGAGCTTTAGCAGCCTCGAAAGCTTGACTTATTTAAATCTTTCTGCAAACAACTTCAAAGGGATTATACCTGTTGAGTTAGGCCATATAATAAATCTTGATACGTTGGATCTATCTAGCAATAATTTTACAGGGCATGTTCCAGGGTCTGTTGGTTATCTTGAGCATCTTCTAACCTTGAACTTAAGCCATAACAGTCTTCAGGGTCCCTTGCCAGCTGAATTTGGAAATCTTAGAAGCATACAAATTATTGACATCTCATTCAACCATCTGTTGGGTAGTATGCCTCCAGAAATTGGCCAGCTGCAGAATCTTGTGTCACTGATTTTAAACAACAATGATTTGGGTGGGAAGATTCCAGATCAGCTTACAAATTGCCTAAGTCTTAACTTCCTGAATGTCTCATATAATAACTTATCCGGGGTCATTCCTCTAATGAAGAACTTCTCACGGTTTTCAGATGACAGCTTCATTGGAAATCCATTATTATGCGGAAATTGGTTAGGATCCATATGTGATCCTTACATACCAAAATCCAGAGTGGTTTTCTCAAGGGCTGCAGTTGTTTGTCTCATAGTTGGTACCATCATATTACTGGCGATGGTAACTGTTGCTCTCTACAGATCAAGCCGATCCATGCAATTGATTAAAGGATCCAGCGGAACTGAGCAAGGGCCACCCAAGCTTGTAATTCTTCATATGGGCCTGGCCATCCATACTTTTGATGATATTATGAGAGTTACTGAGAATCTCAATGAGAAGTATATTGTAGGATATGGTGCCTCAGGTACTGTGTACAAGTGTGTTTTGAAGAATTCCCGGCCAATTGCAATCAAACGACTATACAACCAGCATCAACACAACTCAAGGGAGTTTGAGACAGAACTTGAAACTATTGGCAGCATCAGACACAGGAATCTTGTCACTTTGCATGGTTATGCTCTAACTCCTAACGGAAATCTTCTTTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTTCATGGTCCCTTGAAAAAGGTTAAACTTGATTGGGAAGCACGTTTGAGGATTGCTGTAGGAGCTTCTGAAGGACTTGCTTACCTCCATCATGACTGCAATCCTAGAATTATTCACAGGGATATTAAGTCCTCAAATATCCTGATTGATGAGAACTTTGAAGCTCGCCTGTCTGATTTTGGCATTGCCAAATGTTTATCAACTACAAGAACTCATGCATCAACGTCTGTGCTTGGGACAATAGGCTATATTGACCCTGAGTATGCCCGGAGTTCTAGGTTGAATGAAAAATCCGACGTGTATAGCTTTGGTATTGTTCTACTTGAGTTACTAACTGGGAAGAAAGCAGTGGACAATGATTCCAACTTGCATCACTTGATACTATCTAAGGCAGATAACAACACTATAATGGAGACTGTTGATCCTGAGGTGTCTATTACCTGCATGGATCTGACCCATGTTAAGAAGACCTTTCAGCTTGCTCTTCTTTGCACAAAAGGAAACCCTTCTGAGAGGCCAACTATGCATCAGGTTGCCAGGGTTTTGGCATCACTACTCCCTGCACCTCCCAGCAACATCTTTGCCCCTCCTTCAAAGACCTTTGATTATGCACAAATTGTGATTCAAAAGGGAAACAACCTCCATAGCCCACAATTGGAAAGGTTACAATCTCAGAAGTACTCTAATGATCAATGGTTTGTTCGCTTTGAGAATGTTGTATCAAATAACAGCCTATAG 2970 0.4084 MKGVLPFLGKLRRHFLLLLVAMELLLLLLSPFASPLSDEGQALMKIKASFSNVADVLHDWDDLHNDDFCSWRGVLCDNVSLTVLSLNLSNLNLGGEIPPAIGDLGNLQSIDLQGNKLTGQIPDEIGNCAALIYLDLSDNQLYSDIPFSISKLKQLVFLNLKSNQLTGPIPSILTQIPNLKTLDLARNRLTGEIPRVLYWNEVLQYLGLRGNMLSGTLSPDICQLTGLWYFDVRGNNLTGTIPDSIGNCTNFEILDLSYNQIYGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAILDLSDNELIGPIPPILGNLSFTGKLYLHGNMITGPIPPELGNMSRLSYLQLNDNQLVGQIPDELGKLEHLFELNLANNHLEGSIPLNISSCTALNKFNVHGNHLNGSIPLSFSSLESLTYLNLSANNFKGIIPVELGHIINLDTLDLSSNNFTGHVPGSVGYLEHLLTLNLSHNSLQGPLPAEFGNLRSIQIIDISFNHLLGSMPPEIGQLQNLVSLILNNNDLGGKIPDQLTNCLSLNFLNVSYNNLSGVIPLMKNFSRFSDDSFIGNPLLCGNWLGSICDPYIPKSRVVFSRAAVVCLIVGTIILLAMVTVALYRSSRSMQLIKGSSGTEQGPPKLVILHMGLAIHTFDDIMRVTENLNEKYIVGYGASGTVYKCVLKNSRPIAIKRLYNQHQHNSREFETELETIGSIRHRNLVTLHGYALTPNGNLLFYDYMENGSLWDLLHGPLKKVKLDWEARLRIAVGASEGLAYLHHDCNPRIIHRDIKSSNILIDENFEARLSDFGIAKCLSTTRTHASTSVLGTIGYIDPEYARSSRLNEKSDVYSFGIVLLELLTGKKAVDNDSNLHHLILSKADNNTIMETVDPEVSITCMDLTHVKKTFQLALLCTKGNPSERPTMHQVARVLASLLPAPPSNIFAPPSKTFDYAQIVIQKGNNLHSPQLERLQSQKYSNDQWFVRFENVVSNNSL 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00571 989 SUPERFAMILY Protein kinase-like (PK-like) 639 926 IPR011009 -
Phco5g00571 989 SMART serkin_6 660 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00571 989 Gene3D Phosphorylase Kinase; domain 1 629 735 - -
Phco5g00571 989 Gene3D Ribonuclease Inhibitor 274 584 IPR032675 -
Phco5g00571 989 Pfam Leucine Rich repeat 177 192 IPR001611 GO:0005515
Phco5g00571 989 PANTHER LEUCINE RICH REPEAT KINASE 2 245 929 - -
Phco5g00571 989 ProSitePatterns Protein kinases ATP-binding region signature. 666 688 IPR017441 GO:0005524
Phco5g00571 989 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 311 584 - -
Phco5g00571 989 Gene3D Ribonuclease Inhibitor 36 198 IPR032675 -
Phco5g00571 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 781 793 IPR008271 GO:0004672|GO:0006468
Phco5g00571 989 ProSiteProfiles Protein kinase domain profile. 660 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00571 989 Pfam Protein kinase domain 663 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco5g00571 989 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 631 735 - -
Phco5g00571 989 SUPERFAMILY RNI-like 241 559 - -
Phco5g00571 989 SMART LRR_typ_2 224 248 IPR003591 -
Phco5g00571 989 SMART LRR_typ_2 367 391 IPR003591 -
Phco5g00571 989 SMART LRR_typ_2 176 200 IPR003591 -
Phco5g00571 989 SMART LRR_typ_2 511 535 IPR003591 -
Phco5g00571 989 SMART LRR_typ_2 415 438 IPR003591 -
Phco5g00571 989 SMART LRR_typ_2 104 128 IPR003591 -
Phco5g00571 989 SMART LRR_typ_2 343 366 IPR003591 -
Phco5g00571 989 SMART LRR_typ_2 463 486 IPR003591 -
Phco5g00571 989 Pfam Leucine rich repeat N-terminal domain 37 77 IPR013210 -
Phco5g00571 989 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 36 200 - -
Phco5g00571 989 Pfam Leucine rich repeat 106 165 IPR001611 GO:0005515
Phco5g00571 989 Pfam Leucine rich repeat 441 500 IPR001611 GO:0005515
Phco5g00571 989 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 201 310 - -
Phco5g00571 989 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 736 936 - -
Phco5g00571 989 SUPERFAMILY L domain-like 36 330 - -
Phco5g00571 989 Gene3D Transferase(Phosphotransferase) domain 1 736 934 - -
Phco5g00571 989 Gene3D Ribonuclease Inhibitor 199 273 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00571 Phco-Chr5 5399853 5407128 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Phco5g00571 Pkinase 1.6e-46 CL0016