Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00522 ATGGAGTGTGGTGAAACGTCAACTCAGGGTACTGTGCACGTAGCGCTTCTCATTTGCCACGTAGCCACGTCCAAACTCGAACGACTACCTCCTCTCCACCGCTGCCACCACACCTCCGGCAGCCCCAACAGTGTGATGGAGGAAAAAGAGAATTTGGGTCAGTACAAAGTTGGGTCTTTGCCAACTCTGTTTTACGTTCCTGACTTTATCACAGACAGTGACCAAAGCCTTCTTCTCAACAACATATATGAAGCCCCTGCATCAAAGTGGAAGATTTTGAAGAATAGAAGGCTACAGAATTGGGGTGGTGTTGTCCACGAGAAGGGCCTTCTACCTCAAGTTTTGCCTCCATGGTTAACAAATCTCACACAAAAAATATATGACGAATCCGCGCTATTCCCATCACCAATGAACCATGTTCTTATCAATGAATACCAGCCTAATCAAGGCATAATGCCACATCAGGATGGACCGGCCTATTTTCCAGTGGTAGCCATTCTATCACTTGGGTCTCCTGTTGTCATGGACTTCACTCCCCATGCAAGATTCAAACAAGATTCCCAAGATGATATTGACAAAGATTCTGATCTTGAGATTGGGAAAGATAAGTGGCTTGATGATCACCACCCTTTCACTGTTTTATTGATGCCTCGCAGTTTACTGATATTCAAGGACAAAGCATACTCAGATTACTTACATGGTATACAAGATTGCTCGCTACATTGCTACAATGGGGCTGTAAATGAAACTCAAGCTCTGAAACACCAGGAATCAGATGGAGACTTCTTTAGCTTAGAGGATGCATTGGATACAGTAGCAAAGGAAGAGTATAAGAATATATCAAGAACATCCAATAGAGTTTCATTGACTTGTCGATTGGTTCCCAAGGTTCACAAAAATTTGAATCAAGTTGATCACATAGGAATATCAAGTACTCTATCAGATTTCATGCCTGCCATGAAAAAGAATTCTGAGCAGACTCCTTTTGGATCTGTATTCAACAAGTTGGTGAAGGAGCTTGGAGAACCTGTTGACTTTGAACTTCCAGATTGGTTTAATAAATTGAAGCCAATGCAGTACACCTATATAAAACGCAATATATATCTCACCAAGAAGGTCAAGAGATCCCGGTTTGATGACGATGGAATATTCTGTTCCTGTGCTCCTTCAGCTGGATCTACTAGTGTATGTGGTAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCATCAGGCTGTAAATGTGGGAGCTCTTGTCTTAACAAACCATTCCAGAATCGCCCTGCGAAAAAGATGAAATTGGTTAAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAGCTTGGGGAGTTTGTTATAGAATATGTTGGAGAAGTTATTGATGACAAAACATGTGAGGAAAGGCTTTGGAACATGAAACATCGTGGGGAAACAAACTTCTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCAACATATAAGGGAAACAAATCAAGATACATCAACCATAGTTGCTGCCCCAATACTGAGATGCAGAAATGGATAATTGATGGTGAGACAAGAATTGGCATATTTGCTACTCGGGACATACAAAAGGGCGAGCATCTGACTTACGATTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGTCACTGTGGTGCTGCTTCGTGTAGGCGCAAATTGGGTGTCCGACCTACCAAGCCTAAAATGTCTTCAGATGCTGCATTAAAATTAGTTACATACCAGGTTTATCAGAATGGACGTTTTCAAATTGGAAGTTCTCATGTTGACCACCGAAAATGCTTACATAATTGCATTGGTGAAGTTATTAGGATAAAACGCTTTGAAAAGGAGAGGTTTGGAGTCATTAAACGGTTTGATAAATATTCTCGAAAACATTCAATCATGTTTGAGGATGGTCGTGTTGAACTTTATGACATGTCAAAAGAGGAATGGGAACTTGTGAGATAG 1995 0.4125 MECGETSTQGTVHVALLICHVATSKLERLPPLHRCHHTSGSPNSVMEEKENLGQYKVGSLPTLFYVPDFITDSDQSLLLNNIYEAPASKWKILKNRRLQNWGGVVHEKGLLPQVLPPWLTNLTQKIYDESALFPSPMNHVLINEYQPNQGIMPHQDGPAYFPVVAILSLGSPVVMDFTPHARFKQDSQDDIDKDSDLEIGKDKWLDDHHPFTVLLMPRSLLIFKDKAYSDYLHGIQDCSLHCYNGAVNETQALKHQESDGDFFSLEDALDTVAKEEYKNISRTSNRVSLTCRLVPKVHKNLNQVDHIGISSTLSDFMPAMKKNSEQTPFGSVFNKLVKELGEPVDFELPDWFNKLKPMQYTYIKRNIYLTKKVKRSRFDDDGIFCSCAPSAGSTSVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQNRPAKKMKLVKTEKCGSGIVADEDIKLGEFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAASCRRKLGVRPTKPKMSSDAALKLVTYQVYQNGRFQIGSSHVDHRKCLHNCIGEVIRIKRFEKERFGVIKRFDKYSRKHSIMFEDGRVELYDMSKEEWELVR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00522 664 ProSiteProfiles Post-SET domain profile. 554 570 IPR003616 -
Phco5g00522 664 CDD Tudor_Agenet_AtEML-like 614 662 - -
Phco5g00522 664 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 136 295 IPR005123 -
Phco5g00522 664 Pfam 2OG-Fe(II) oxygenase superfamily 100 292 IPR027450 -
Phco5g00522 664 CDD SET_ASHR3-like 432 570 - -
Phco5g00522 664 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 353 608 IPR025787 -
Phco5g00522 664 ProSiteProfiles AWS domain profile. 380 429 IPR006560 GO:0005634|GO:0042054
Phco5g00522 664 SUPERFAMILY SET domain 353 566 IPR046341 -
Phco5g00522 664 Gene3D SET domain 350 586 IPR046341 -
Phco5g00522 664 FunFam Histone-lysine N-methyltransferase 346 586 - -
Phco5g00522 664 Gene3D - 53 302 IPR037151 -
Phco5g00522 664 PANTHER SET DOMAIN PROTEINS 338 587 - -
Phco5g00522 664 SMART shorttest3 380 430 IPR006560 GO:0005634|GO:0042054
Phco5g00522 664 ProSiteProfiles SET domain profile. 431 548 IPR001214 GO:0005515
Phco5g00522 664 SUPERFAMILY Clavaminate synthase-like 61 295 - -
Phco5g00522 664 SMART set_7 431 554 IPR001214 GO:0005515
Phco5g00522 664 Pfam SET domain 442 547 IPR001214 GO:0005515
Phco5g00522 664 SMART PostSET_3 554 570 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00522 Phco-Chr5 4876687 4891102 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco5g00522 2OG-FeII_Oxy_2 4e-11 CL0029