Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00413 ATGAAAGAAACAATGGCAGGGACAGGGTGTGATACAAAAAGCTACAATAAGAAGAAAAGAGAAAAAATGTCACCGGTTGGATTACCACCTGGCTTTAGGTTCCATCCAACTGATGAAGAGCTTGTCAACTACTATCTCAAGAGGAAGATCAATGGCCAAGAAATTGAGCTTGATATCATCCCTGAAGTTGATCTCTACAAATGTGAACCTTGGGAATTAGCAGAGAAATCATTTTTACCGAGTAGAGATCCAGAGTGGTACTTTTTTGGACCCCGGGATAGGAAATACCCAAATGGATTTAGAACAAATAGAGCAACTCGTGCAGGGTACTGGAAGTCCACTGGAAAAGATAGGAGAGTTTCCTGCCAAAGCAGACCCATTGGCATGAAGAAGACTTTGGTTTACTATAGAGGCAGAGCTCCTCAAGGGATCAGAACTGATTGGGTAATGCATGAATATCGCCTTGATGACAAAGAGTGTGAAGACACCACTGGATTACAGGATACTTATGCATTGTGCCGTGTGTTCAAGAAAAACGGAATCTGTTCTGAGATTGAAGAGCAAGGACAATGTAGTATATCACTAATTGAGAGCTGCCAAACCATAATTAATGAGTGTGAAACCATGTCTCCAGACATACCAGGGGCATCATCATCATGCTTGGAAGAGGAAGACAAAGATGATTCATGGATGCAGTTCATTACAGAAGATGCATGGTATTCTTCTAATGCAGCTATGGTTGGTGGTGAAGAACTCTCACATGTTACATTTACAAACTAA 780 0.4128 MKETMAGTGCDTKSYNKKKREKMSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSCQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDTTGLQDTYALCRVFKKNGICSEIEEQGQCSISLIESCQTIINECETMSPDIPGASSSCLEEEDKDDSWMQFITEDAWYSSNAAMVGGEELSHVTFTN 259
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00413 259 FunFam Nac domain-containing protein 86 37 181 - -
Phco5g00413 259 Pfam No apical meristem (NAM) protein 29 155 IPR003441 GO:0003677|GO:0006355
Phco5g00413 259 Gene3D NAC domain 37 181 IPR036093 GO:0003677|GO:0006355
Phco5g00413 259 MobiDBLite consensus disorder prediction 1 30 - -
Phco5g00413 259 SUPERFAMILY NAC domain 23 179 IPR036093 GO:0003677|GO:0006355
Phco5g00413 259 ProSiteProfiles NAC domain profile. 28 178 IPR003441 GO:0003677|GO:0006355
Phco5g00413 259 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 27 198 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phco5g00413 Phco-Chr5 3744064 3748843 Dispersed/Transposed
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco5g00413 NAM 1.2e-39 No_clan