Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00410 ATGGAGATGCAGGATCAAATAGAAAGCACTAGATCAACCATATCTGGCTCAGCTAGTTACTGCCATTCAAATGGTGGAAAACAATCTGAAACTGTTGCTCACATACCTTCTGTTGGAAACAGCCATACTCCCAAGGTGAGGAAACCATACACCATTACTAAGCAGAGGGAGAAGTGGACAGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAATTGTACGGTCGAGGGTGGCGCCAAATTGAAGAGCATATAGGTACCAAAACAGCTGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTTTCTAAGGTTGTTAGGGAATCTGAGGGCAGTGCTGAGAGTTCTGTACAGCCAATTAACATACCTCCTCCTCGGCCTAAGAGAAAACCCCTCCATCCATATCCCCGTAAATCAGTTGATGCTTTCAAAGGACACACCACACCTAATGAAACAGAAACATCTCAATCCACGAACCTGTTGGTTGCAGAGAAAGACACCCCATCTCCGACTTCTGTGCTATCTACGGTTGGTTCGGAAGCATTTGGGTCTGCATTTTCAGAGCAGAATAACAGATGCCTTTCACCAAACTCTTGCACCACTGATATTCACTCGGTCAGCTTGTCTCCTGTTGAAAAGGAAAATGATTGTATGACATCCAAAGCATCTGAGGAGGAAGAGAAAGGATCTCCCGCCTCAGTTCCTTTATCCATTGTTTCTAACCCAAACGTGTGCATGAAGCCCGAGTTTAGTTCCAAGGGAACCGAATATGTTATAGAAGATACTACCAATATGCCACAAACCACTAGTATTAAGCTTTTCGGAAGAACAGTCTCTATGGTAGATAATGAGAAGTTGCAGAACATAGATGATAATGGTAAGGCAATAACCGTGAAGTCTGATGAAGTGGATGATGATGTTGAGAATGAGAAGCCTGACCAATCAACTGAGCAAGTAGATACACAATTATCTCTAGGCTTGGTTGGTGGCAACTGTCCCATAACACCTGATTCTGAGGGAGCTGACCGCAGGGAAGAGCCACCGAAGGAGAACATGTGCCTCAGTGAATATGCACCTGATGCATCTTTTCCACAGTGGAGTTTGTACCAAGGCCTTCCAGCTTTCTGCGTCAGCCCATGCAATCAGATCCTAAACCCCATGCCTCTTAGGCCCTCTTTGAAAGTAAGAGCAAGAGAGGAGGAAAGTTGTTGCACTGGTTCCAACACTGAATCAGTTTGTGACATGGATAACCAAGGCAAGAACTCAGATGCTGTTGATTCTAAGAGTCAAAAATATCAAGGGGAAGGAGCTGCACCCCAGAAGCCTGCAAAAGGGTTGGTTCCATATAAAAGATGTTTAGCTGAAAGAGATGGAAATTCATTCATTGCGGCCATGGAAGAGAGGGACGGGCAACGAGCTCGTGTGTGCTCATAG 1431 0.4479 MEMQDQIESTRSTISGSASYCHSNGGKQSETVAHIPSVGNSHTPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESEGSAESSVQPINIPPPRPKRKPLHPYPRKSVDAFKGHTTPNETETSQSTNLLVAEKDTPSPTSVLSTVGSEAFGSAFSEQNNRCLSPNSCTTDIHSVSLSPVEKENDCMTSKASEEEEKGSPASVPLSIVSNPNVCMKPEFSSKGTEYVIEDTTNMPQTTSIKLFGRTVSMVDNEKLQNIDDNGKAITVKSDEVDDDVENEKPDQSTEQVDTQLSLGLVGGNCPITPDSEGADRREEPPKENMCLSEYAPDASFPQWSLYQGLPAFCVSPCNQILNPMPLRPSLKVRAREEESCCTGSNTESVCDMDNQGKNSDAVDSKSQKYQGEGAAPQKPAKGLVPYKRCLAERDGNSFIAAMEERDGQRARVCS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00410 476 FunFam protein REVEILLE 6 isoform X1 58 106 - -
Phco5g00410 476 Gene3D - 58 105 - -
Phco5g00410 476 MobiDBLite consensus disorder prediction 413 428 - -
Phco5g00410 476 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Phco5g00410 476 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Phco5g00410 476 MobiDBLite consensus disorder prediction 300 319 - -
Phco5g00410 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Phco5g00410 476 MobiDBLite consensus disorder prediction 209 235 - -
Phco5g00410 476 MobiDBLite consensus disorder prediction 107 173 - -
Phco5g00410 476 NCBIfam myb-like DNA-binding domain, SHAQKYF class 54 103 IPR006447 GO:0003677
Phco5g00410 476 MobiDBLite consensus disorder prediction 413 442 - -
Phco5g00410 476 MobiDBLite consensus disorder prediction 1 46 - -
Phco5g00410 476 MobiDBLite consensus disorder prediction 329 348 - -
Phco5g00410 476 SUPERFAMILY Homeodomain-like 50 104 IPR009057 -
Phco5g00410 476 ProSiteProfiles SANT domain profile. 54 105 IPR017884 -
Phco5g00410 476 PANTHER SWI/SNF COMPLEX-RELATED 26 288 - -
Phco5g00410 476 CDD SANT 58 101 IPR001005 -
Phco5g00410 476 SMART sant 55 103 IPR001005 -
Phco5g00410 476 MobiDBLite consensus disorder prediction 144 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00410 Phco-Chr5 3730754 3734210 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco5g00410 Myb_DNA-binding 1.6e-13 CL0123