Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco5g00408 ATGGAGTATGGAAGTGGGTCTCCTGGTGATCTCCATCATCACCATGATGGTTCTTCTGATTCCCAGAGAAGGAAGAAGCGTTACCACCGTCACACAGCTAACCAGATTCAGAGGCTTGAATCGATGTTCAAGGAGTGTCCTCACCCTGATGAGAAGCAACGGATGCAGTTAAGTAGGGAGTTAGGCTTGGCGCCTAGACAGATCAAGTTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCTCAGCATGAGAGAGCTGATAATTCTGCGCTACGGCAAGAGAATGACAAGATACGTTGCGAGAACATAGCCATAAGGGAGGCCTTGAAAAACGTTATTTGCCCTTCTTGTGGTGGTCCTCCTATCAATGACGATTGTTATTTTGATGAGCAAAAGTTGAGATTGGAGAATGCTCAACTCAAAGAGGAGCTTGATAGAGTATCTAGCATTTCAGCTAAGTACATCGGAAGGCCGATTTCTCAACTCCCACCTGTTCAGCCTATTCATATATCTTCTCTGGACTTGTCAATGGGGAGTTTTGCAAGCCAAGGGTTGGGTGGCCCTTCACTTGATCTTGATCTTCTCCCCGGGAGTTCATCGTCCATGCCGAATGTGCCTTCTTTCCAACCTGCGTGTCTTTCGGACATGGATAAGTCCCTCATGTCAGACATTGCCTCAAATGGAATGGAAGAAATGATCAGGCTATTGCAGACAAATGAGCCCTTGTGGATGAAAGGTGCTGATGGGAGGGATGTCCTTGATCTTGATACCTATGAGAGAATGTTCCCCAAGGCTAATGGTCACATGAAGAACCCCAATGTTCATGTTGAAGCTTCAAGAGATTCAGGAGTTGTAATTATGAATGGCTTAACTTTGGTTGACATGTTTATGGACCCGAACAAGTGGATGGAGCTGTTTCCCACCGTTGTCACAACGGCAAGAACAATTGAGGTTATATCTTCTGGAATGATGGGGGGTCATAGCGGTTGTTTGCAATTGATGTATGAGGAGTTGCAAGTGCTTTCTCCACTTGTTTCTACTAGAGAGTTCTACTTCCTGCGTTACTGTCAGCAAATTGAACAAGGCTTATGGGCGATAGTAGATGTTTCATATGATTTTCCTCAAGACAACCAATTTGCTCCTCAATTTCGATCTCATCGTCTGCCTTCTGGTGTCTTTATCCAAGACTTGCCTAATGGATATTCCAAGGTTACCTGGATTGAACATGTAGAGGTTGAAGATAAAACTCCAGTTCATAGGCTCTATAGAAACATGATTTATAGTGGCATTGCATTTGGAGCTCAAAGATGGCTAACTACACTTCAGAGGATGTGTGAAAGGATTGCTTGTCTAATGGTGACGAGCAATTCCACCCGCGATCTTGGGGGAGTGATTCCCTCACCTGAGGGCAAGAGAAGCATGATGAAACTTGCACAAAGGATGGTTACCAATTTTTGTGCAAGCATTAGTGCATCAGCTGGGCACCGATGGACCACACTCTCTGGTAGTGGGATGAATGAGATTGGAGTCAGAGTCACTGTGCATAAGAGCACAGACCCTGGGCAACCTAATGGCGTGGTGCTAAGTGCAGCCACCACCATTTGGCTCCCAATTCCTCCACAAACTGTGTTCAATTTCTTCAAGGATGAAAAGAAAAGACCTCAGTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATTGCTAATGGGGCACACCCTGGTAACTGCATATCTGTGCTTCGGGCTTTCAACACAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTGGACTCTTCAGGTTCCCTAGTGGTGTATTGTCCAGTTGATCTTCCAGCCATCAACATAGCAATGAGTGGTGAAGACCCTTCATACATTCCCCTCCTTCCCTCAGGCTTCACAATTTCACCTGATGGGCAAGCTGAGCAAGATGGTGGAGGGGCCTCAACCAGCACAAGTTCAGGCAGGGTCATGGGGGGCTCTGGGGGATCACTCATCACTGTTGCATTCCAAATCCTAGTGAGCAGTTTACCATCTGCCAAACTCAACTTTGAGTCGGTGACCACTGTTAATAGCCTCATCGGCAACACTGTCCAGCAAATAAAGGCTGCCTTGAATTGTCCTAGTTCCTGA 2148 0.4637 MEYGSGSPGDLHHHHDGSSDSQRRKKRYHRHTANQIQRLESMFKECPHPDEKQRMQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRQENDKIRCENIAIREALKNVICPSCGGPPINDDCYFDEQKLRLENAQLKEELDRVSSISAKYIGRPISQLPPVQPIHISSLDLSMGSFASQGLGGPSLDLDLLPGSSSSMPNVPSFQPACLSDMDKSLMSDIASNGMEEMIRLLQTNEPLWMKGADGRDVLDLDTYERMFPKANGHMKNPNVHVEASRDSGVVIMNGLTLVDMFMDPNKWMELFPTVVTTARTIEVISSGMMGGHSGCLQLMYEELQVLSPLVSTREFYFLRYCQQIEQGLWAIVDVSYDFPQDNQFAPQFRSHRLPSGVFIQDLPNGYSKVTWIEHVEVEDKTPVHRLYRNMIYSGIAFGAQRWLTTLQRMCERIACLMVTSNSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCASISASAGHRWTTLSGSGMNEIGVRVTVHKSTDPGQPNGVVLSAATTIWLPIPPQTVFNFFKDEKKRPQWDVLSNGNAVQEVAHIANGAHPGNCISVLRAFNTSQNNMLILQESCVDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGQAEQDGGGASTSTSSGRVMGGSGGSLITVAFQILVSSLPSAKLNFESVTTVNSLIGNTVQQIKAALNCPSS 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco5g00408 715 CDD START_ArGLABRA2_like 218 446 - -
Phco5g00408 715 MobiDBLite consensus disorder prediction 1 32 - -
Phco5g00408 715 SMART START_1 223 447 IPR002913 GO:0008289
Phco5g00408 715 CDD homeodomain 24 83 IPR001356 GO:0003677
Phco5g00408 715 Pfam START domain 228 447 IPR002913 GO:0008289
Phco5g00408 715 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Phco5g00408 715 SUPERFAMILY Homeodomain-like 5 82 IPR009057 -
Phco5g00408 715 SUPERFAMILY Bet v1-like 468 707 - -
Phco5g00408 715 ProSiteProfiles START domain profile. 214 450 IPR002913 GO:0008289
Phco5g00408 715 SUPERFAMILY Bet v1-like 215 448 - -
Phco5g00408 715 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Phco5g00408 715 Gene3D - 255 447 IPR023393 -
Phco5g00408 715 Gene3D - 11 99 - -
Phco5g00408 715 FunFam Homeobox-leucine zipper protein GLABRA 2 223 446 - -
Phco5g00408 715 MobiDBLite consensus disorder prediction 7 23 - -
Phco5g00408 715 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Phco5g00408 715 MobiDBLite consensus disorder prediction 642 661 - -
Phco5g00408 715 Coils Coil 130 150 - -
Phco5g00408 715 SMART HOX_1 23 86 IPR001356 GO:0003677
Phco5g00408 715 FunFam Homeobox-leucine zipper protein HDG1 12 98 - -
Phco5g00408 715 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 22 711 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco5g00408 Phco-Chr5 3697903 3701348 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco5g00408 START 8.9e-48 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00408 5 3697903 3701348 Phco5g00408 5 3697903 3701348 ECH
Phco4g03762 4 56937047 56939975 Phco5g00408 5 3697903 3701348 PCT